Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1200 ATGTGGTGGCTGTTTGGGAGAAGAAACGGTTCTGGTTTTTCATCTTCTTCAACTGCTGAGGAAGTTACTGAAGGGATCGATGGCACTGCCCTTACTGCTATTGTCACAGGTGCAACCAGTGGTATTGGTGCTGAGGCTACTCGTGTACTTGCCATGCGTGGTGTTCATGTAATTATGGGGGTGAGAAATTTGGTTGCTGCAAAAGATATAAAGAAAGAAATACTTCAGAAGATTCCTACTGCTAAAGTTGATTACATGGAGTTAGACCTTAGTTCAATGACATCTGTTCGAAATTTTGCATCAGAGTTCATTTCATCTGCTCTTCCATTAAACATTTTGATAAACAATGCAGGAATTTTTGCAACCCCTTTCACTCTCTCTGAAGACAACATTGAACTGCAATTTGCCACAAATCACATGGGTCATTTCTTGCTAACAAATTTGTTGTTGGATGCTATGAAGAAAACAACTCATGAAAGTAAGAAACAAGGAAGAATTGTTAATATCTCCTCTATACTTCATCAATTACCGAATCGTGGAGGAATTCGTTTTGATCAAATTAATGACCCATCAAGTTATCATAAGTGGCTTGCATATGGACAATCAAAGTTGGCTAACATTTTACATGCCAATGAACTTTCAAGACGTCTCAAGGAAGAAGGGGTAGATATTACAGCTAATTCTCTTCATCCGGGAGCTATTGTTACCAATATTTTTCGTCACACCAATATACTGTCTGGTTTAATTAATACGGTGGGTAGACTTGTGTTTAAAAACGTCCAGCAGGGAGCTGCAACAACATGCTATGTAGCATTGCATCCACAAGTGAGGGAAATCAGTGGTCAGTATTTTGAAGATTGTAATGTTTCCACAGCAAACTCACACTCAAGGGACATTGATTTGGCCAAGAAATTATGGGATTTTAGCTTAAACTTGATCAAGTAG 945 0.3873 MWWLFGRRNGSGFSSSSTAEEVTEGIDGTALTAIVTGATSGIGAEATRVLAMRGVHVIMGVRNLVAAKDIKKEILQKIPTAKVDYMELDLSSMTSVRNFASEFISSALPLNILINNAGIFATPFTLSEDNIELQFATNHMGHFLLTNLLLDAMKKTTHESKKQGRIVNISSILHQLPNRGGIRFDQINDPSSYHKWLAYGQSKLANILHANELSRRLKEEGVDITANSLHPGAIVTNIFRHTNILSGLINTVGRLVFKNVQQGAATTCYVALHPQVREISGQYFEDCNVSTANSHSRDIDLAKKLWDFSLNLIK* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1200 314 Gene3D - 27 314 - -
Pvu4g1200 314 PRINTS Glucose/ribitol dehydrogenase family signature 32 49 IPR002347 -
Pvu4g1200 314 PRINTS Glucose/ribitol dehydrogenase family signature 108 119 IPR002347 -
Pvu4g1200 314 PRINTS Glucose/ribitol dehydrogenase family signature 158 174 IPR002347 -
Pvu4g1200 314 PRINTS Glucose/ribitol dehydrogenase family signature 222 239 IPR002347 -
Pvu4g1200 314 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 291 IPR036291 -
Pvu4g1200 314 CDD retinol-DH_like_SDR_c_like 32 306 - -
Pvu4g1200 314 PANTHER RETINOL DEHYDROGENASE 3 314 - -
Pvu4g1200 314 Pfam short chain dehydrogenase 32 178 IPR002347 -
Pvu4g1200 314 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 3 314 - -
Pvu4g1200 314 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 108 119 IPR002347 -
Pvu4g1200 314 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 172 IPR002347 -
Pvu4g1200 314 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 199 218 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1200 Pvu-Chr4 37132868 37139528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1200 34 284 Acyl Lipid Metabolism Gene Families AT3G55290 30.153 3.00e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1200 - - gmx:100794358 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1200 4 37132868 37139528 Pvu7g0741 7 6621102 6626658 PCT