Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1170 ATGGATACACCATTAGTGATCCAAAACTTGACTTCAGAATCTGACTATTTGGCAGTGAAAAGGTTGAAGGATGTTAAATTTGTTTTGTGGACAGAGACAGTGAAGATATGGAGGATAGCAATCCCAGTGGCATTGAGCCATCTGTTTCAGTTCCTCACAAACTCCTCAACTTCCATCTATGCTGGTCATCTTGGGGACACTGAACTCTCTTCTATCTCTGTTAGCCAAGGGGTCATCAGTTCCATCTACTTTAACTTGCTGTTTGGTATGTCATCTGCACTGGCAACACTTTGTGGCCAAGCTTTTGGAGCAGGGAAAATTCAATCTACTTGTATTTATATTCAAAGGTCATGGATTATACTTACCATCACTTGCACAATACTCTTGCCTATTTATATATTTGCCACACCAATCTTAAAGTTGCTTGGCCAAGATGAAGGAATAGCTAATCTTGCTGGCACATATTCTATACAATTGATTCCCCACATGTTTTCCTTTGCAATAGTTTTTCCCACCATGAGATTTCTTCAGGCCCAGAGCAAGGTGAAAGTTATCATGTGCATAGCATTTGTGGTTTTGCTCATCCAAAACGGGTTGCTTTACATGTTCATAAGTGTATTTGGTTGGGGTACAACTGGTTTGGCCATGGTGAGTAACATCATAGGGTGGCTCTATGCTGTGTCTTTGGTTGTGTATACCATTGGATGGAGCAATGAAGAATGGAGTGGATTTTCTTGGATGGCATTTAGGGATTTATGGCCATTTGCTAAGTTAAGCCTTGCATCATCTGTCATGATTTGCTTAGAGCAATGGTATCTTACATGCATCATGCTCCTTGTTGGTCTACTAGACAATCCTGTGATTTCTGTTGGTTCCTATTCTATTTGCTTAAATGTTCAGGGTTGGTACTACACGCTGCTCCTTGGTATAAACACAGCCATAAGTGTTCGTGTCTCCAACACGCTTGGCCTGTCACATCCAAGAGCATCCAAATACTCTTTCTATGTGGCAATGTTCCAGTCTCTCCTCCTTGGTATTCTTTTCATGGCACTTATTTTCCTCACTAAAGAAGATTTAGCCACCATCTTTACCAATAGTGAGGAAATCATACTAGCTGTTGCTGATTTAGCATACCTTCTTGGCATAACAATGGTTCTCAATAGCGCATCACAGGTCATATCAGGTGTGGCCATTGGAAGTGGATGGCAAGTGATGGTTGCTTACATAAACATGGCATGTTATTACATTGTTGGACTCCCAATTGGAATTTTCCTTGGTTTCAACCAGCATTTAGGGGTCAAGGGTCTCTGGGGAGGCACAATGTGTGGCAGTGTTCTGCAGGTTTTTGTCCTCTTACTGATTATTTGGAAGACTAATTGGACCAAGGAGGTGGAGCAAACAGCTCATCGCATAAGCACATTGAACATTGACAACCACCACTCAGATATCATAGAGAATGTTACATGA 1467 0.4145 MDTPLVIQNLTSESDYLAVKRLKDVKFVLWTETVKIWRIAIPVALSHLFQFLTNSSTSIYAGHLGDTELSSISVSQGVISSIYFNLLFGMSSALATLCGQAFGAGKIQSTCIYIQRSWIILTITCTILLPIYIFATPILKLLGQDEGIANLAGTYSIQLIPHMFSFAIVFPTMRFLQAQSKVKVIMCIAFVVLLIQNGLLYMFISVFGWGTTGLAMVSNIIGWLYAVSLVVYTIGWSNEEWSGFSWMAFRDLWPFAKLSLASSVMICLEQWYLTCIMLLVGLLDNPVISVGSYSICLNVQGWYYTLLLGINTAISVRVSNTLGLSHPRASKYSFYVAMFQSLLLGILFMALIFLTKEDLATIFTNSEEIILAVADLAYLLGITMVLNSASQVISGVAIGSGWQVMVAYINMACYYIVGLPIGIFLGFNQHLGVKGLWGGTMCGSVLQVFVLLLIIWKTNWTKEVEQTAHRISTLNIDNHHSDIIENVT* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1170 488 CDD MATE_eukaryotic 32 466 IPR045069 GO:0042910|GO:1990961
Pvu4g1170 488 Pfam MatE 42 197 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pvu4g1170 488 Pfam MatE 263 422 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pvu4g1170 488 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 476 - -
Pvu4g1170 488 TIGRFAM matE: MATE efflux family protein 42 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pvu4g1170 488 PANTHER PROTEIN DETOXIFICATION 1 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1170 Pvu-Chr4 36310909 36313382 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1170 K03327 - gmx:100817098 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1170 4 36310909 36313382 Pvu4g1170 4 36310909 36313382 ECH
Pvu4g1170 4 36310909 36313382 Pvu7g0750 7 6693535 6697334 PCT