Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1158 ATGAAGCCGTGTTCAAAATTCAGTGACTCCTATGTTGTTGGGGTGATCTTCACAGTTTTGTTGCTGGGATTACAAGGAGTGAGGGTTGTTGAATGCAAAGTAGCCAATGGATTGGATTTTCTTGAGTACCCTGCTATCAGCTGCAGAAAACACACTGCAGTTTTGACTGATTTTGGGGGCGTTGGTGATGGAAAAACATCTAACACCAAGGCCTTTCAATACGCAATTAGCAACCTCAGTCATTATGCATCTGATGGTGGAGCTATACTTCTTGTGCCACCAGGAAAATGGCTAACAGGAAGCTTCAATCTCACAAGCCATTTCACCCTTTTTCTCCAAAATGAAGCTACCATCCTTGCATCTCAGGATGAATCAGAGTGGCCCATACTTTCTGTTCTACCATCCTATGGCAGAGGAAGAGATGCTCCTGATGGAAGATTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAGTAATCACTGGTTACAATGGGACAATTGATGGACAAGGATCTTATTGGTGGGACAAGTTTCACAAAGATGAATTGAAACTCACCAGGCCTTACTTGATTGAGATTATGTTCTCTAATCACATCCAAATATCAAATCTCACTTTGGTCAATTCTCCATCTTGGTTTGTCCATCCAATTTACAGCAGTGACATCATAATTCAAGGACTGACCATTCTTGCTCCTGTTGACTCTCCTAACACAGATGGAATAAATCCAGATTCTTGTAGCAACACTAGGATTGAAGATTGCTATATTGTATCCGGTGATGATTGTATAGCAATAAAAAGTGGTTGGGATGAGTATGGAATCAAATTTGGAATGCCAAGCAAACACATAATAATTAGAAGGCTTGAATGTGTATCCCCTGATAGTGCTATGATTGCTTTAGGCAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGCAGAAGACCTTACAGCTATCAACACTGAATCAGCAGTTAGAATAAAAACGGCAGTTGGTAGAGGTGCATATGTGAGAGACATATTTGTGAAAGGAATGAACTTAAACACAATGAAGTATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACCCTGGCTTTGATCCCAAAGCACTTCCTAACATTACTGGAATAAACTATAGAGATGTATTTGCAGATAATGTAACATATTCTGCAAGACTTGATGGAATTGCTAATGATCCTTTTACAGGAATCTGTATTTCTAATGTGACTATCCATAGTGGTGATAAGAAATTGCAATGGAATTGCACTGATATTGAGGGGGTGACAAGCAATGTCTATCCTAAGCCTTGTGAATTGCTGCCAGAGAAGAAAGAGAAAATTGAGTGTCCTTATCCAGATGACAAAGTGCCCATCGAAAGTGTTCAGCTGAAGACTTGTTCCTTGAAAAGTTTCCCAGTCTTCTAA 1434 0.3996 MKPCSKFSDSYVVGVIFTVLLLGLQGVRVVECKVANGLDFLEYPAISCRKHTAVLTDFGGVGDGKTSNTKAFQYAISNLSHYASDGGAILLVPPGKWLTGSFNLTSHFTLFLQNEATILASQDESEWPILSVLPSYGRGRDAPDGRFSSLIFGTNLTDVVITGYNGTIDGQGSYWWDKFHKDELKLTRPYLIEIMFSNHIQISNLTLVNSPSWFVHPIYSSDIIIQGLTILAPVDSPNTDGINPDSCSNTRIEDCYIVSGDDCIAIKSGWDEYGIKFGMPSKHIIIRRLECVSPDSAMIALGSEMSGGIQDVRAEDLTAINTESAVRIKTAVGRGAYVRDIFVKGMNLNTMKYVFWMTGSYGSHPDPGFDPKALPNITGINYRDVFADNVTYSARLDGIANDPFTGICISNVTIHSGDKKLQWNCTDIEGVTSNVYPKPCELLPEKKEKIECPYPDDKVPIESVQLKTCSLKSFPVF* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1158 477 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 17 470 - -
Pvu4g1158 477 PANTHER PECTIN LYASE-RELATED 17 470 - -
Pvu4g1158 477 Gene3D - 42 438 IPR012334 -
Pvu4g1158 477 SUPERFAMILY Pectin lyase-like 46 470 IPR011050 -
Pvu4g1158 477 Pfam Glycosyl hydrolases family 28 149 429 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1158 Pvu-Chr4 35909441 35912267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1158 41 471 Glycoside Hydrolase AT3G48950 70.938 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1158 - - gmx:100785005 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1158 4 35909441 35912267 Pvu7g0759 7 6804799 6807915 PCT