Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0596 ATGATGGACAAGGTGAGTCAATATGTGTGTGTTTTCAACCACTTTGATGAGAATGGAGACGGGAAGATATCAGCGTCGGAGCTGCGGCAGTGCGTGGAGGCGATCGGCGGGAAGTTGTCGTGGAAGGAGGCGGAGAGCTTGGTGGAAGTTCTGGACTCGGACAAGGACGGGCTGGTGGGGTTGGATGATTTTGTGAGGTTTGTGGAGGAAGTGGAAGAGGAAGAGAAGGTGGAAGACCTGAGAGAGGCCTTTAAGATGTATGAAATGGAGGGGTGTGGTTGCATCACACCAAAGAGTCTCAAGAGAATGCTTGGGAGATTGGGGGAGTGCAAGAGCATAGATGAGTGTCAAGGAATGATAGCTAGATTTGACCTTAATGGGGATGGGGTTCTCACTTTTGATGAATTTAGGGTTATGATGTTGTAA 426 0.4906 MMDKVSQYVCVFNHFDENGDGKISASELRQCVEAIGGKLSWKEAESLVEVLDSDKDGLVGLDDFVRFVEEVEEEEKVEDLREAFKMYEMEGCGCITPKSLKRMLGRLGECKSIDECQGMIARFDLNGDGVLTFDEFRVMML* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0596 141 ProSiteProfiles EF-hand calcium-binding domain profile. 39 74 IPR002048 GO:0005509
Pvu4g0596 141 SMART efh_1 7 35 IPR002048 GO:0005509
Pvu4g0596 141 SMART efh_1 79 107 IPR002048 GO:0005509
Pvu4g0596 141 SMART efh_1 43 71 IPR002048 GO:0005509
Pvu4g0596 141 SMART efh_1 115 141 IPR002048 GO:0005509
Pvu4g0596 141 ProSitePatterns EF-hand calcium-binding domain. 52 64 IPR018247 -
Pvu4g0596 141 Gene3D - 2 72 - -
Pvu4g0596 141 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 3 141 - -
Pvu4g0596 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 141 - -
Pvu4g0596 141 ProSitePatterns EF-hand calcium-binding domain. 16 28 IPR018247 -
Pvu4g0596 141 Pfam EF-hand domain pair 10 68 IPR002048 GO:0005509
Pvu4g0596 141 Pfam EF-hand domain pair 78 140 IPR002048 GO:0005509
Pvu4g0596 141 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Pvu4g0596 141 Gene3D - 73 141 - -
Pvu4g0596 141 SUPERFAMILY EF-hand 5 141 IPR011992 -
Pvu4g0596 141 ProSiteProfiles EF-hand calcium-binding domain profile. 3 38 IPR002048 GO:0005509
Pvu4g0596 141 Coils Coil 70 90 - -
Pvu4g0596 141 CDD EFh 79 140 IPR002048 GO:0005509
Pvu4g0596 141 CDD EFh 11 67 IPR002048 GO:0005509
Pvu4g0596 141 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Pvu4g0596 141 ProSiteProfiles EF-hand calcium-binding domain profile. 111 141 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0596 Pvu-Chr4 7183009 7183700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0596 3 140 EF-hand Containing Proteins AT1G76650 45.652 4.33e-38 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0596 K13448 - fve:105352384 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0990 1 20789706 20790128 Pvu4g0596 4 7183009 7183700 PCT