Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0990 ATGGACAAGCTAAGGCAATATGAACGTGTATTCAAGCAGTTTGACGAGAATGGTGACGGCAAGATATCGGCGTGGGAGCTGCAACAATGCGTGGAGGCCATGGGTGAGGAGTTGTCTGCTGCGGATGCGGCGGCGACTGTGACTGCGATGGACGCTGACGGGGATGGGATGGTGGGGTTTGATGATTTTGTGAGGTTTGTGGAGGGAGGGAAAGAGGAAGAGAAAGAGAATGACCTAAAAGAGGCTTTTAAGATGTATGAGATGGAAGAGAGTGGTTGCATCACACCCAGAAGTCTTAAAATGATGCTTAGTAGGTTGGGTGAATCTACGAGTATAGATGAGTGTGAAGTTATGATAGCTAGATTTGATCTTGATGGAGATGGGGTGCTCACTTTCGATGAATTTAAGGTCATGATGTTGTAA 423 0.4681 MDKLRQYERVFKQFDENGDGKISAWELQQCVEAMGEELSAADAAATVTAMDADGDGMVGFDDFVRFVEGGKEEEKENDLKEAFKMYEMEESGCITPRSLKMMLSRLGESTSIDECEVMIARFDLDGDGVLTFDEFKVMML* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0990 140 CDD EFh 78 139 IPR002048 GO:0005509
Pvu1g0990 140 SMART efh_1 42 70 IPR002048 GO:0005509
Pvu1g0990 140 SMART efh_1 78 106 IPR002048 GO:0005509
Pvu1g0990 140 SMART efh_1 114 140 IPR002048 GO:0005509
Pvu1g0990 140 SMART efh_1 6 34 IPR002048 GO:0005509
Pvu1g0990 140 CDD EFh 6 67 IPR002048 GO:0005509
Pvu1g0990 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Pvu1g0990 140 SUPERFAMILY EF-hand 3 139 IPR011992 -
Pvu1g0990 140 Pfam EF-hand domain pair 7 67 IPR002048 GO:0005509
Pvu1g0990 140 Pfam EF-hand domain pair 90 139 IPR002048 GO:0005509
Pvu1g0990 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Pvu1g0990 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Pvu1g0990 140 Gene3D - 1 69 - -
Pvu1g0990 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Pvu1g0990 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Pvu1g0990 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Pvu1g0990 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 2 140 - -
Pvu1g0990 140 Gene3D - 70 140 - -
Pvu1g0990 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 2 140 - -
Pvu1g0990 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0990 Pvu-Chr1 20789706 20790128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0990 2 139 EF-hand Containing Proteins AT1G76650 52.899 5.33e-45 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0990 K13448 - gmx:100784553 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0990 1 20789706 20790128 Pvu1g0990 1 20789706 20790128 ECH
Pvu1g0990 1 20789706 20790128 Pvu4g0596 4 7183009 7183700 PCT