Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0589 ATGGCTGCCTCATCCACCATCAACAACTTCCTCTCTTTCTTCTTACCCACAAAACCGCCGCCACCCTCTACACCGCCGCCACCGCAATTCAACCCCACCACTTCTTCTTCCACCCACAAGCCCTCACAACCTCTAATTGCGCAATATGACCCTTCATCTTCATCTGAACTGTCCTCTGTGATATGCCCCTCCATGGCCTACTCCAACACGCTCTTCTTCCAGTCACCCTACAACGTGCAGGTGGTGGTGGCCGAGGACGAGCCCGAGGAGCGCCTCCTCAACAGGTTCCGCAGAGAGGTGTTGAGGGCCGGCGTCATCCAGGAGTGTAGGCGGAGGAGGTACTTCGAGAACAAACAGGAAGAGAAAAAACGCAAGTCGCGTGAAGCTGCCAAACGTAACCGCAAAAGACGCCCCATGTCAAAAACTGTAGCACAGAAAAAACAGGATGTCCCAGCAACCAAGAGAGAAGAAGACAAGGATAACTGGGATCTACCTGAAGGAGACAGTCTGTATTAA 516 0.5291 MAASSTINNFLSFFLPTKPPPPSTPPPPQFNPTTSSSTHKPSQPLIAQYDPSSSSELSSVICPSMAYSNTLFFQSPYNVQVVVAEDEPEERLLNRFRREVLRAGVIQECRRRRYFENKQEEKKRKSREAAKRNRKRRPMSKTVAQKKQDVPATKREEDKDNWDLPEGDSLY* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0589 171 MobiDBLite consensus disorder prediction 148 165 - -
Pvu4g0589 171 MobiDBLite consensus disorder prediction 33 51 - -
Pvu4g0589 171 MobiDBLite consensus disorder prediction 1 51 - -
Pvu4g0589 171 Gene3D Ribosomal protein S8 93 131 IPR038380 -
Pvu4g0589 171 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 31 171 IPR001911 GO:0003735|GO:0005840|GO:0006412
Pvu4g0589 171 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 31 171 - -
Pvu4g0589 171 Hamap 30S ribosomal protein S21 [rpsU]. 78 134 IPR001911 GO:0003735|GO:0005840|GO:0006412
Pvu4g0589 171 MobiDBLite consensus disorder prediction 117 171 - -
Pvu4g0589 171 PRINTS Ribosomal protein S21 family signature 82 90 IPR001911 GO:0003735|GO:0005840|GO:0006412
Pvu4g0589 171 PRINTS Ribosomal protein S21 family signature 90 99 IPR001911 GO:0003735|GO:0005840|GO:0006412
Pvu4g0589 171 PRINTS Ribosomal protein S21 family signature 102 112 IPR001911 GO:0003735|GO:0005840|GO:0006412
Pvu4g0589 171 PRINTS Ribosomal protein S21 family signature 114 124 IPR001911 GO:0003735|GO:0005840|GO:0006412
Pvu4g0589 171 TIGRFAM S21p: ribosomal protein bS21 79 136 IPR001911 GO:0003735|GO:0005840|GO:0006412
Pvu4g0589 171 MobiDBLite consensus disorder prediction 15 32 - -
Pvu4g0589 171 Pfam Ribosomal protein S21 80 134 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0589 Pvu-Chr4 7055374 7057738 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0589 - - vra:106765493 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0977 1 20537277 20539547 Pvu4g0589 4 7055374 7057738 PCT