Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0588 ATGTCTGTGAACAATAATAACCCTTCTAAGGGCATTGGGGCCTCTTCCTCATCCTTTGGCAATGCTGGAATATCCTCCAATTCTATACCTACAAACCTTGGTTTTTCACAGTCCCAAGGACCGGGCCAGATTCCCGTTGGTTTTCAAGGGCAGTTTCCACTGTCACAGGCCCATGCTATTGTCCAAGCTCAGTCCAAGGCCCAGGCTCAGGCTCAGGCTCATGCCCAAGCAGCAGCTGCAGCCCATGCTCAAATCCAGGCTCATTTGCAAGCACAGGGTTTGAGTCTTAATCAGAACCAAGGTGGTGGTTTGGGGAGTTTGGGGCTGTCCTCGCCTATTTCCACACCGGGCAATGCTAGTGGGAAACGGATCCCTTTGAAACCTCCAATTCGGCCAGTTGGATTTTCCCCTCCCAACAGCTTCTCTCCTTTGAGACCGATGGAGCTCACACCTGCTTCCCGGAGGAAGAAGCAGAAGCTTCCGGAGAAGCAGCTGCAAGATAAAGTGGCAGCTATACTGCCCGAGTCTGCCCTGTACACACAGCTTCTCGAGTTTGAGTCTCGTGTTGATGCAGCACTTGCTAGGAAGAAGGCTGACATCCAGGAAGCGCTCAAAAACCCACCCTGTATTCAGAAAACCCTTCGCATCTATGTATTTAACACTTTTGCTAATCAAATTCGCACAATTCCAAAGAAGCCGACTGCAGAGCCTCCAACCTGGACGCTGAAGATAGTTGGAAGGATATTGGAAGATGGTGTAGACCCTGATCAGCCAGGAGTGGTTCAGAAGTCGACTCCTTTGTATCCCAAGTTTTCAGCTTTCTTCAAAAGAGTAACCATTTCTTTAGATCAGAGACTATATCCAGATAATCATATTATTATGTGGGAGAATGCTCGATCACCTGCTCCACATGAAGGTTTTGAAGTTAAGAGGAAAGGGGATAAAGAGTTTACAGTGAATATACGGCTGGAAATGAATTATATACCAGAGAAGTTTAAGCTTTCGCCTGCTTTGACAGAGGTTCTTGGTATTGAGGTTGATACCCGCCCAAGAATTGTTGCTGCGATCTGGCACTATGTAAAGGCCAGGAAGTTGCAAAACCCTAATGACCCTTCTTTCTTTCACTGTGATCAGCCTCTTCAGAAAGTATTTGGAGAAGAAAAGATGAAGTTTACAATGGTTTCTCAGAAAATATCTTCACATTTGTTCCCTCCACAGCCTATACTTTTGGAACACAAGATCAAGCTATCGGGAAACAGTCCAGCTGGGACTGCTTGTTATGATGTGATGGTTGATGTTCCTTTCCCAATTCAGAGGGAGTTGTCTGCTTTATTGGCTAATGTGGAAAAGAACAAAGAGATTGAGACATGTGATGAAGCAATATGTGGAATCATTAGAAAAATTCATGAGCACAGAAGGAGACGGTCATTCTTTCTTGGTTTCAGTCAATCGCCAGTAGAATTTATTAATGCATTGATTGAATCTCAAAGCAGGGATCTGAAACTTGTTTCCGGAGAACCTAGTCGCAATGCAGAAAAAGAGCGCAGATCAGATTTCTTCAACCAACCATGGGTTGAAGATGCTGTTATTCGATATCTGAATCGCAAACCAGCTGTGGGAAGTGATGCACCAGGAAGCACATGA 1644 0.4538 MSVNNNNPSKGIGASSSSFGNAGISSNSIPTNLGFSQSQGPGQIPVGFQGQFPLSQAHAIVQAQSKAQAQAQAHAQAAAAAHAQIQAHLQAQGLSLNQNQGGGLGSLGLSSPISTPGNASGKRIPLKPPIRPVGFSPPNSFSPLRPMELTPASRRKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKADIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPTAEPPTWTLKIVGRILEDGVDPDQPGVVQKSTPLYPKFSAFFKRVTISLDQRLYPDNHIIMWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYIPEKFKLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGEEKMKFTMVSQKISSHLFPPQPILLEHKIKLSGNSPAGTACYDVMVDVPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRSFFLGFSQSPVEFINALIESQSRDLKLVSGEPSRNAEKERRSDFFNQPWVEDAVIRYLNRKPAVGSDAPGST* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0588 547 CDD SWIB_like 334 402 - -
Pvu4g0588 547 Gene3D SWIB/MDM2 domain 324 408 IPR036885 -
Pvu4g0588 547 MobiDBLite consensus disorder prediction 107 147 - -
Pvu4g0588 547 ProSiteProfiles SWIB/MDM2 domain profile. 327 404 IPR003121 -
Pvu4g0588 547 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 96 539 - -
Pvu4g0588 547 SUPERFAMILY SWIB/MDM2 domain 322 412 IPR036885 -
Pvu4g0588 547 SMART swib_2 328 407 IPR019835 -
Pvu4g0588 547 Pfam SWIB/MDM2 domain 331 402 IPR003121 -
Pvu4g0588 547 MobiDBLite consensus disorder prediction 1 23 - -
Pvu4g0588 547 PANTHER SWIB/MDM2 DOMAIN-CONTAINING PROTEIN-RELATED 96 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0588 Pvu-Chr4 7035645 7038863 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pvu4g0588 SWIB 4.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0588 K11650 - gmx:100776562 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0975 1 20327733 20330144 Pvu4g0588 4 7035645 7038863 PCT
Pvu1g1064 1 23630842 23632284 Pvu4g0588 4 7035645 7038863 PCT