Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0975 ATGTCTATGTACAACAACTACAACTCTATGAAGCCCCTTGGGGCTTCTTCCTCCGGCACCCAACACCCCCAAATTGCGCCGGGCCAATACCCTCAGTCCCAGGCCCACGCCATCGTCCAAGCGCAGTTTCAGGCCCAGCTCCAAGCCCACGGGCTTTCCTTCGCCCCAAACGCCAAACGTTTCCCTCCAAAACCCCCCGTTCATACCGCCACGCCGCTTAAACAAACGGAATCCGTGCCTGGGCCTCGAAGGAAGAAGCACAAGCAAAATGAGAAACAGCTTCCGGAGAAAGCCTTGGCAATTCTCCCAGAGTCGGCACTCTACGCGCAGCTCCTCGACGTGGAGGTGCGTGTGGACGCTGCACTCGCTAGAAAGAAGGTTGACATTCAAGAAGCAGTGAAAAACCCACCCTTCATCCAGAAAACCCTTCGAATTTTCGTGTTTAACACGTTTGCGAACCAGAATGTGGATTCATCCGCTCCCACGTGGACTCTTAAGATTGTTGGGAGGATTTTGGAAGACGGTGAAGAATCTGAACAAGCTGGAGTTGCTGCTCACAGGATGCCACCTTTGTACCCGAAATTTTCTGCCTTTTTCAAAAGGGTAACGATTTCCCTCGACAAGAGGCTGTATCCAGAGAACCATGTCATCACGTGGGAGAATTCACGGTCCTCTGCCACTCATGAAGGTTTTGAGGTGAAGAGGAAAGGGGATAAGGAGTTCTCGGCGCAGATTCGGTTGGAGATGAATTACGTGCCAGAGAAGTTTATGCTATCGCCGGTGTTGAGGGAATTGCTTGGTATTCAGGTTGACACGCGGGCAAGGATTGTTTCAGCTATATGGCATTATGTGAAGGCGAGGAAGTTGCAGAACCAGAATGATCCTTCGTACTTTCACTGCGATCTGGCTCTTCAGAAGGTGTTTGGGGAGGATAAGGTTAGGTTCTCGATGGTTTCGCAGAAGATATCGCAGCATTTGTTTCCTCCTCAGGTTATTCTTTTGGAACATATGATCAAGCTCTCGGGGAATAGTCCGGTTGGGTCTGCTTGTTATGATGTGATGGTTGATGTTCCTTTTCCCATGCAGAGGGAATTGAATGCTCTGGTGGCCAATGTGGAGAGAAACAAAGAGATTGATGCCTGTGATGAATCCATATGCGGAATCATTAGAAAAATACACGAGCACCGCAGGAGACGAGCGTTCTTTGTTGGTTTTAGTCAATCCCCTCTGGAATTTATTAAGGCCTTGGTTGAATCTCAAAACAAGGATCTCAAAGTTTTACTTGGAGAATCTGGTCACAATGCTGATAAGGAGCGCAAATCAGATTTCTTTAAGCAACCATGGGTTGAGGATGCTATTGTTCGCTATTTGAATCGCAAACCAGCAGCAGGAAGCAATGCCCCAGGGAGCTCATGA 1416 0.4887 MSMYNNYNSMKPLGASSSGTQHPQIAPGQYPQSQAHAIVQAQFQAQLQAHGLSFAPNAKRFPPKPPVHTATPLKQTESVPGPRRKKHKQNEKQLPEKALAILPESALYAQLLDVEVRVDAALARKKVDIQEAVKNPPFIQKTLRIFVFNTFANQNVDSSAPTWTLKIVGRILEDGEESEQAGVAAHRMPPLYPKFSAFFKRVTISLDKRLYPENHVITWENSRSSATHEGFEVKRKGDKEFSAQIRLEMNYVPEKFMLSPVLRELLGIQVDTRARIVSAIWHYVKARKLQNQNDPSYFHCDLALQKVFGEDKVRFSMVSQKISQHLFPPQVILLEHMIKLSGNSPVGSACYDVMVDVPFPMQRELNALVANVERNKEIDACDESICGIIRKIHEHRRRRAFFVGFSQSPLEFIKALVESQNKDLKVLLGESGHNADKERKSDFFKQPWVEDAIVRYLNRKPAAGSNAPGSS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0975 471 SUPERFAMILY SWIB/MDM2 domain 246 336 IPR036885 -
Pvu1g0975 471 MobiDBLite consensus disorder prediction 55 95 - -
Pvu1g0975 471 Pfam SWIB/MDM2 domain 255 326 IPR003121 -
Pvu1g0975 471 PANTHER SWI/SNF COMPLEX COMPONENT SNF12 HOMOLOG ISOFORM X1 63 468 - -
Pvu1g0975 471 CDD SWIB_like 258 326 - -
Pvu1g0975 471 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 63 468 - -
Pvu1g0975 471 SMART swib_2 252 331 IPR019835 -
Pvu1g0975 471 MobiDBLite consensus disorder prediction 79 94 - -
Pvu1g0975 471 MobiDBLite consensus disorder prediction 1 33 - -
Pvu1g0975 471 Gene3D SWIB/MDM2 domain 248 331 IPR036885 -
Pvu1g0975 471 ProSiteProfiles SWIB/MDM2 domain profile. 251 328 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0975 Pvu-Chr1 20327733 20330144 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pvu1g0975 SWIB 3.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0975 K11650 - gmx:100785069 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0975 1 20327733 20330144 Pvu1g0975 1 20327733 20330144 ECH
Pvu1g0975 1 20327733 20330144 Pvu4g0588 4 7035645 7038863 PCT