Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2646 ATGTCTGGACCCCTAACTCCAAAGACATCTCTTGAAAAGGGTGATCGTGTTGGTTCATTGAAGAAGAAGTTGAGGAATTCCTTGACAAGGAGTAGAAGAAGAAGCAGCAGCAAGGTCATGTCGGTTGAAATCGAGGATATCCGCGATGCTGAAGAATCCAAAGCCGTTGATGAGTTCCGTCAGGCTCTCATCTTGGACGAGCTACTCCCAGAGAAGCACGATGATTATCACATGTTGCTCAGGTTCCTTAAGGCAAGGAAATTTGACCTTGAGAAGTCTAAGCAAATGTGGACTGACATGCTTCAGTGGAGGAAGGAATTTGGTGCTGATACCATCACCGAGGATTTTGAATTCAAGGAACTGGATGAAGTCTTGCAATATTATCCTCATGGACATCACGGAGTCGATAAAGATGGTCGACCAGTGTACATCGAGAGATTGGGCCAAGTCGACGCCACCAAGTTGATGCAGGTCACAACCATGGACCGCTATGTCAAATACCATGTGAAGGAGTTCGAGAGGACATTTGATGTGAAATTCGCAGCTTGCTCCCTTGCTGCAAAGAAACACATCGATCAAAGCACAACCATCCTTGATGTGCAAGGAGTGGGCCTTAAGAACTTCAACAAGCATGCCAGGGAGCTCATCACTGCTCTTCAAAAGATTGACGGTGACAACTATCCTGAAACCTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGGGCACTGTTAAATCCTTCCTTGACCCAAAGACCACATCAAAAATCCATGTTCTTGGCAACAAGTACCAAAGCAAATTGCTTGAAATGATTGATGAGAGTGAGTTGCCAGAGTTTTTGGGAGGCAAATGTACCTGTGCCGATCAAGGAGGCTGCATGCGCTCTGATAAGGGCCCCTGGAAGGATGAGGAAATAATGAAGATGGTTCAAAATGGTGAGCACAAATGTTCAAGGAAATGTGAGGCTCCAGTCATGGAAGAGAAGACAACTTCTGAGGAACCCGAGACTACTACGTCCGAGGCAAATCTCACCACACAATTGTCTGTTGTCCTTGGTGAGGCCGTTTCTGCCAAGAGCTACAACTACGAGGACTTTGTCTCCTCTGCTGAAAAAACTGCTTGGAAAAAGGTGGAAGACAATGACAAATATGCAGTATCCAAAGATGGAGCAGATGCATACGCCATGGATTCTTTCAAGATTCACGAGAAAGTGAATTCACAAATCTTCACTGGCGTGATGGCATTTGTGATGGGCATAGTGACGATGGTGAGGATGACCAGGAACATGCCCAAGAAGCTCACAGACGCCAACTTCTACTCCAACTTCGGTGGTGAATACAACAAGGGCCAGGGTAACGACCAAATGACCATTCCTGCCATCTCTCCTCAAGAGTTCATGACTGTGATGAAGCGCATGGCTGAGTTGGAAGAGAAAATGACCAACATGAACAACTTCACCATCTGCATGCCACCTGAGAAGGAGGAAATGCTCAATGCTGCTATCACCCGTGCAGATGCTTTGGAGCAAGAACTCATGGCAACCAAAAAGGCTTTGGAGGATTCCCTTACTAAGCAAGAGGAGCTTTCAGCTTACGTTGAAAAGAAGAAGAAGAAGAAGAAGTTGTTCGCCTGGTAA 1653 0.4604 MSGPLTPKTSLEKGDRVGSLKKKLRNSLTRSRRRSSSKVMSVEIEDIRDAEESKAVDEFRQALILDELLPEKHDDYHMLLRFLKARKFDLEKSKQMWTDMLQWRKEFGADTITEDFEFKELDEVLQYYPHGHHGVDKDGRPVYIERLGQVDATKLMQVTTMDRYVKYHVKEFERTFDVKFAACSLAAKKHIDQSTTILDVQGVGLKNFNKHARELITALQKIDGDNYPETLNRMFIINAGSGFRMLWGTVKSFLDPKTTSKIHVLGNKYQSKLLEMIDESELPEFLGGKCTCADQGGCMRSDKGPWKDEEIMKMVQNGEHKCSRKCEAPVMEEKTTSEEPETTTSEANLTTQLSVVLGEAVSAKSYNYEDFVSSAEKTAWKKVEDNDKYAVSKDGADAYAMDSFKIHEKVNSQIFTGVMAFVMGIVTMVRMTRNMPKKLTDANFYSNFGGEYNKGQGNDQMTIPAISPQEFMTVMKRMAELEEKMTNMNNFTICMPPEKEEMLNAAITRADALEQELMATKKALEDSLTKQEELSAYVEKKKKKKKLFAW* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2646 550 Gene3D - 108 320 IPR036865 -
Pvu3g2646 550 SMART CRAL_TRIO_N_2 75 100 IPR011074 -
Pvu3g2646 550 Pfam CRAL/TRIO domain 126 288 IPR001251 -
Pvu3g2646 550 Coils Coil 503 534 - -
Pvu3g2646 550 CDD SEC14 121 289 IPR001251 -
Pvu3g2646 550 Pfam CRAL/TRIO, N-terminal domain 71 99 IPR011074 -
Pvu3g2646 550 MobiDBLite consensus disorder prediction 1 36 - -
Pvu3g2646 550 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 120 294 IPR001251 -
Pvu3g2646 550 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 2 547 - -
Pvu3g2646 550 SUPERFAMILY CRAL/TRIO domain 120 316 IPR036865 -
Pvu3g2646 550 SMART sec14_4 120 291 IPR001251 -
Pvu3g2646 550 Gene3D - 26 107 - -
Pvu3g2646 550 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 2 547 - -
Pvu3g2646 550 SUPERFAMILY CRAL/TRIO N-terminal domain 49 116 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2646 Pvu-Chr3 48479752 48484017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2646 54 285 Acyl Lipid Metabolism Gene Families AT5G47730 28.049 7.25e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2646 - - gmx:100785716 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2646 3 48479752 48484017 Pvu3g2646 3 48479752 48484017 ECH
Pvu11g0441 11 3734608 3738850 Pvu3g2646 3 48479752 48484017 ECH