Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2340 ATGGCCGAATCGGTGGAGCTGCCGAGTCGCTTGGCGATTCTCCCTTTCAAGAACAAGGTTCTTTTACCCGGCGCCATCATCAGAATCCGCTGCACTTCCCCTACCAGTGTGAAGTTGGTTGAACAAGAACTTTGGCAGCGAGAAGAGAAGGGGTTGATTGGCATCCTTCCAGTGCGTGATGCTGCTGAAATTAAGGCAGTAGGTCCTACTGTATCTGAAGGCACTGATTCTGCAAATCAAAACACAAGAGTTCAAGGCGGTTCATCGGATTCTCATAAGCTTGATACAAAAAGGCAGAATGATGTTGTTCATTGGCACAATAGGGGGGTAGCTGCCCGACCATTACATTTATCAAGGGGAGTAGAGAAACCAAGTGGGAGGGTTACATACACGGTTGTGCTTGAAGGTTTGTGCAGATTTAGTGTACAGGAACTGAGCACAAGAGGAATATACCATACTGCAAGGATAACTTCCCTCGAAATGACCAAGACTGAGCTGGAACAAGTGGAGCAAGATCCAGATTTCATAATGTTGTCTCGCCAATTCAAAGCTACTGCTATGGAGCTTATTTCTGTTTTGGAGTTGAAACAAAAAACTGGTGGAAGGACAAAAGTCCTTTTGGATAACGTTCCAGTTCACAAGTTGGCTGATATATTTGTTGCTAGTTTTGAGATAAGTTTTGAAGAACAATTATCTATGTTGGATTCAGTTGACCCCAAAGTGAGGCTTTCAAAAGCAACTGAGTTAGTTGACAGGCATTTACAGTCAATTCGTGTGGCTGAGAAAATTACACAAAAGGTTGAAGGACAATTGTCAAAATCTCAGAAAGAATTTCTTTTGCGCCAGCAGATGAGGGCTATAAAAGAGGAGCTTGGTGATAATGATGATGATGAAGATGACCTGGCTGCTCTAGAAAGAAAGATGCAAAGTGCAAGAATGCCACAAAATATATGGAAACATGCACACAGAGAGTTGAGGAGGCTTAAAAAAATGCAGCCGCAGCAACCAGGGTATAACAGTTCAAGGGTTTACCTAGAGCTTCTTGCTGATCTGCCCTGGGAGACGGCTAGCGAAGAGATTGAACTGGACTTAAGAGCTGCACAGAAGCGACTTGATAGTGATCACTATGGTTTAGTGAAGGTTAAGCAAAGGATAATTGAGTACCTGGCAGTTCGCAAGCTTAAACCAGATGCAAGGGGTCCTGTGTTGTGCTTTGTTGGGCCACCAGGTGTTGGGAAAACATCTTTGGCATCTTCTATTGCTGCTGCTTTGGGAAGAAAATTTGTTCGCATATCCCTTGGTGGAGTCAAGGATGAGGCAGATATTAGAGGACATAGGAGAACATATGTTGGAAGCATGCCTGGGCGTCTCATAGATGGTTTAAAG 1386 0.4401 MAESVELPSRLAILPFKNKVLLPGAIIRIRCTSPTSVKLVEQELWQREEKGLIGILPVRDAAEIKAVGPTVSEGTDSANQNTRVQGGSSDSHKLDTKRQNDVVHWHNRGVAARPLHLSRGVEKPSGRVTYTVVLEGLCRFSVQELSTRGIYHTARITSLEMTKTELEQVEQDPDFIMLSRQFKATAMELISVLELKQKTGGRTKVLLDNVPVHKLADIFVASFEISFEEQLSMLDSVDPKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLAALERKMQSARMPQNIWKHAHRELRRLKKMQPQQPGYNSSRVYLELLADLPWETASEEIELDLRAAQKRLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYVGSMPGRLIDGLK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2340 462 Gene3D - 364 462 IPR027417 -
Pvu3g2340 462 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 462 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Pvu3g2340 462 SMART lon_5 10 252 IPR003111 -
Pvu3g2340 462 Coils Coil 287 307 - -
Pvu3g2340 462 Pfam ATP-dependent protease La (LON) substrate-binding domain 11 252 IPR003111 -
Pvu3g2340 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 458 IPR027417 -
Pvu3g2340 462 ProSiteProfiles Lon N-terminal domain profile. 11 252 IPR003111 -
Pvu3g2340 462 SUPERFAMILY PUA domain-like 10 251 IPR015947 -
Pvu3g2340 462 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 462 - -
Pvu3g2340 462 MobiDBLite consensus disorder prediction 69 96 - -
Pvu3g2340 462 CDD AAA 384 449 - -
Pvu3g2340 462 Pfam ATPase family associated with various cellular activities (AAA) 403 457 IPR003959 GO:0005524|GO:0016887
Pvu3g2340 462 Gene3D - 1 160 IPR046336 -
Pvu3g2340 462 MobiDBLite consensus disorder prediction 72 89 - -
Pvu3g2340 462 Gene3D - 167 295 - -
Pvu3g2340 462 Gene3D - 303 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2340 Pvu-Chr3 44761239 44766367 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2340 K01338 - gmx:100789982 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2340 3 44761239 44766367 Pvu3g2340 3 44761239 44766367 ECH
Pvu2g0029 2 303573 312728 Pvu3g2340 3 44761239 44766367 PCT