Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0029 ATGGCGGAATCGATTGAACTTCCGAGTCGGTTAGCAATCCTTCCATTCAGGAACAAAGTCCTTTTGCCTGGCGCCATCATTCGTATTTATTGCACTTCTCCCACAAGTGTGAAGTTGGTGGAGCAAGAACTTTGGCAGCGAGAAGACAAGGGCTTGATTGGCATCTTACCGGTACGTGATGCTGCTCAACTTAAGACAGCGGCTCCTGTTGTACCCCACGGGGTAGGTACTGATTCTCTAGACAAAAGCTCAAAAGTGCAAGGCGGTTCGCCAAATTCTCATGAGCTTGATGCGAATAGTCAGCATGATGTTGTTCATTGGCATAAGAGGGGGGTAGCTGCTCGAGCACTACACTTATCTAGGGGAGTGGAGAAACCAAGTGGAAGAGTCACATATATTGTTGTTCTTGAAGGTCTATGCAGGTTTAGTGTCCAGGAACTAAGCATGAGAGGAACATACCATACTGCAAGGATCTCATCCCTAGAGATGACCAGGACTGAGATGGAACAGGTGGAGCAAGACCCGGATTTTATAATGTTATCTCGGCAATTTAAAGCAACAGCCACAGAGCTTATTTCTGTTCTGGAGCAGAAACAAAAAACTGGTGGGAGGACAAAAGTTCTTTTGGAAACAGTTCCAGTGCACAAGTTGGCTGATATATTTGTTGCTAGCTTTGAGATAAGTTTTGAAGAACAGCTATCAATGTTGGATTCTGTTGACCCTAAAGTCAGGCTTTCAAAAGCGACAGAATTGGTTGATAGGCACTTACAGTCAATACGTGTAGCAGAGAAAATTACACAAAAGGTTGAAGGACAATTGTCAAAATCTCAAAAGGAATTTCTCCTTCGACAGCAGATGAGGGCTATAAAAGAGGAGCTCGGTGATGATGATGATGATGAAGATGACCTTGCTGCCCTGGAAAGAAAGATGCAAAGTGCAGGAATGCCACAGAATGTATGGAAGCATGTTCAGAGAGAGTTAAGGAGACTTAAAAAAATGCAGCCTCAGCAGCCTGGGTATAACAGTTCACGGGCTTATCTGGATCTTCTTGCTGATTTGCCATGGCAGAAGACCAGCAAAGAGCTTGAACTGGACTTAAAAGCTGCACAGGAGCGGCTGGACAATGATCACTATGGTTTAGTGAAGGTCAAGCAACGGATAATTGAATACTTGGCTGTTCGCAAGCTTAAGCCAGATGCAAGGGGTCCAATATTGTGCTTTGTTGGACCACCGGGTGTTGGGAAGACATCATTGGCATCTTCTATTGCTGCTGCTCTGGACAGAAAATTTGTACGCATATCCCTTGGTGGAGTCAAGGATGAGGCTGATATTAGAGGACACAGGAGAACATACATCGGAAGCATGCCTGGGAGGCTTATAGATGGACTGAAGAGAGTAGCAGTTTGCAATCCTGTCATGTTGCTTGATGAAATTGACAAGACAGGGTCTGATGTTCGCGGAGATCCAGCTTCTGCATTGCTAGAGGTTCTTGATCCAGAACAAAACAAAACATTCAATGATCATTATTTGAATGTTCCATTTGATCTATCCAAGGTCATTTTTGTGGCTACAGCAAATAGAGCACATCCTATTCCTCCACCTCTGCTTGACAGGATGGAGGTCATTGAGCTTCCTGGATATACACCTGAGGAAAAGCTCAAAATAGCCATGAAGCATTTGATTCCAAGAGTTTTGGATCAGCATGGTTTGAGTTCTGAGTTTCTTCAGATTCCAGAGGGAATGGTGGAACTTGTTATTCAGAGATATACTAGGGAAGCTGGTGTACGCAATTTGGAAAGGAGTCTTGCTTCCCTGGCTCGTGCTGCTGCAGTAAGAGTAGCAGAGCAAGACCACGTAGTTCCATTAAGCAAAGGGGTTGAGGGACTTTCTACCCCACTTCTGGAAAGTAAACTTGCTGATGCTGCTGAGGTTGAACTGGAAGTGATACCCATGGGTGTCAACAATCGTGACATTTCAAACACATTCAGGATCATCTCTCCATTGGTTGTTGATGAAGCTATGCTTGAAAAAGTTCTAGGGCCTCCAAAGTTTGATGGAAGGGAAGCAGCAGACCGTGTAGCTACCCCTGGGGCTTCTGTTGGGCTGGTTTGGACTACTTTTGGTGGGGAAGTTCAGTTTGTGGAGGCTACAACAATGGTCGGCAAGGGTGAATTGCATCTTACTGGACAACTGGGTGATGTGATCAAAGAATCAGCTCAGATAGCACTAACATGGGTAAGGGCAAGAGCAGCTGAACTTAGGCTAGCTGCTGCAGAGGGTATTAGTCTGTTGGAAGGCCGAGATATACACATACATTTTCCTGCAGGTGCTGTACCAAAAGATGGGCCTTCAGCTGGAGTGACTTTGGTAACAGCATTGGTATCACTTTTCAGTCAGAAAAGAGTGAGATCAGATACTGCTATGACTGGGGAGATGACGTTGAGAGGTCTTGTACTACCTGTTGGTGGTATCAAGGATAAGGTA 2484 0.4509 MAESIELPSRLAILPFRNKVLLPGAIIRIYCTSPTSVKLVEQELWQREDKGLIGILPVRDAAQLKTAAPVVPHGVGTDSLDKSSKVQGGSPNSHELDANSQHDVVHWHKRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSMRGTYHTARISSLEMTRTEMEQVEQDPDFIMLSRQFKATATELISVLEQKQKTGGRTKVLLETVPVHKLADIFVASFEISFEEQLSMLDSVDPKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDDDDDEDDLAALERKMQSAGMPQNVWKHVQRELRRLKKMQPQQPGYNSSRAYLDLLADLPWQKTSKELELDLKAAQERLDNDHYGLVKVKQRIIEYLAVRKLKPDARGPILCFVGPPGVGKTSLASSIAAALDRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAHPIPPPLLDRMEVIELPGYTPEEKLKIAMKHLIPRVLDQHGLSSEFLQIPEGMVELVIQRYTREAGVRNLERSLASLARAAAVRVAEQDHVVPLSKGVEGLSTPLLESKLADAAEVELEVIPMGVNNRDISNTFRIISPLVVDEAMLEKVLGPPKFDGREAADRVATPGASVGLVWTTFGGEVQFVEATTMVGKGELHLTGQLGDVIKESAQIALTWVRARAAELRLAAAEGISLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSQKRVRSDTAMTGEMTLRGLVLPVGGIKDKV 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0029 828 Pfam ATP-dependent protease La (LON) substrate-binding domain 11 254 IPR003111 -
Pvu2g0029 828 TIGRFAM lon: endopeptidase La 13 828 IPR004815 GO:0004176|GO:0005524|GO:0006508
Pvu2g0029 828 SMART AAA_5 401 546 IPR003593 -
Pvu2g0029 828 SUPERFAMILY Ribosomal protein S5 domain 2-like 696 828 IPR020568 -
Pvu2g0029 828 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 781 789 IPR008268 GO:0004176|GO:0004252|GO:0006508
Pvu2g0029 828 Gene3D - 305 353 - -
Pvu2g0029 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 619 IPR027417 -
Pvu2g0029 828 PIRSF Lon_proteas 653 828 IPR004815 GO:0004176|GO:0005524|GO:0006508
Pvu2g0029 828 PIRSF Lon_proteas 1 625 IPR004815 GO:0004176|GO:0005524|GO:0006508
Pvu2g0029 828 SMART lon_5 10 254 IPR003111 -
Pvu2g0029 828 Pfam ATPase family associated with various cellular activities (AAA) 405 542 IPR003959 GO:0005524|GO:0016887
Pvu2g0029 828 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 828 - -
Pvu2g0029 828 Gene3D - 366 544 IPR027417 -
Pvu2g0029 828 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 409 428 - -
Pvu2g0029 828 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 696 712 - -
Pvu2g0029 828 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 778 797 - -
Pvu2g0029 828 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 808 827 - -
Pvu2g0029 828 MobiDBLite consensus disorder prediction 73 99 - -
Pvu2g0029 828 MobiDBLite consensus disorder prediction 80 98 - -
Pvu2g0029 828 Gene3D - 2 162 IPR046336 -
Pvu2g0029 828 ProSiteProfiles Lon N-terminal domain profile. 11 254 IPR003111 -
Pvu2g0029 828 Gene3D - 695 828 IPR014721 -
Pvu2g0029 828 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 828 IPR027501 GO:0004252|GO:0006515
Pvu2g0029 828 SUPERFAMILY PUA domain-like 10 253 IPR015947 -
Pvu2g0029 828 Pfam Lon protease (S16) C-terminal proteolytic domain 670 828 IPR008269 GO:0004176|GO:0004252|GO:0006508
Pvu2g0029 828 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 828 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Pvu2g0029 828 Gene3D - 545 684 - -
Pvu2g0029 828 ProSiteProfiles Lon proteolytic domain profile. 693 828 IPR008269 GO:0004176|GO:0004252|GO:0006508
Pvu2g0029 828 Gene3D - 172 297 - -
Pvu2g0029 828 CDD AAA 386 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0029 Pvu-Chr2 303573 312728 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0029 K01338 - gmx:100796650 1472.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0029 2 303573 312728 Pvu2g0029 2 303573 312728 ECH
Pvu2g0029 2 303573 312728 Pvu3g2340 3 44761239 44766367 PCT