Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2338 ATGGCCGTTCAAGCTCAATATCCATCCAATGTTCTCTTTCTAAACAGGAACAACGCCCAAGAAGTCCTTGACTATTCATTGCCGCAGCAACAACAACAAGGAGGCCTTTTAAACCAACCCCACATGCTATTCAACAACGACAATGGAAGTAACAATGTCAACAACAACAATTGTCGGAAGAGAGGCAGAGAAGACACCACTGTTGCAAACAACACAATGACCACAACAACTTCTAATGTTATCAATCCTTTCTCTTTACAATCTCAGCCTCCACAACTTATTCATCTCTCTCAGTTACATAATCATCAACAACAACAACAAAATGTCGTCTCTACTGGTCTCCGCTTATCCTTCGATGACCACCAACAACAACAACAAAGACTACAGCTTCATCAAAATCAATCTCAACAACAACTATTACTACATGGCTCTCACTCTTCTGCCTTCTCGTCTCTATTATCCCAAGGCTTGGCTTCTCAAATCAAACAACAACGCGATGAAATTGATCAATTCCTCCAAGCCCAGGGAGAACAACTACGGCGGACATTGGCAGAGAAGAGGCAGAAGCATTATAACGCGCTGCTAGGCGCGGCGGAGGAAGCCGTGGCACGGCGGCTCCGAGAGAAGGAGGCGGAAGTGGAGAAGGCCACGCGGAAGAACGCAGAGCTAGAAGCACGGGCGGCCCAGCTGAGCGTGGAGGCGCAGGTGTGGCAGGCCAAAGCCCGGGCCCAGGAAGCAACGGCGGCTTCTCTCCAGGCTCAACTACAGCAGACCATGTGTCAGGGGGGCGAGGAAGCGGCCGCCGGCGTATCGTGTGCCGTGGAAGGCCAGGCTGAGGACGCGGAATCGGCTCACATCGACCCAGAGCGCGTGGTGTTAGCAGTGGCGCGTCCCAAATGCAGAGGGTGCACAAAGCGCGTGGCCTCGATCGTGGTTTTGCCGTGTCGGCACTTGTGTATCTGTACAGAATGCGATGCGCATTTCCGAGCGTGCCCAGTTTGTCTCACACCAAAGAATTCAACCGTTGAAGTTTTTCTCTCTTAA 1044 0.5115 MAVQAQYPSNVLFLNRNNAQEVLDYSLPQQQQQGGLLNQPHMLFNNDNGSNNVNNNNCRKRGREDTTVANNTMTTTTSNVINPFSLQSQPPQLIHLSQLHNHQQQQQNVVSTGLRLSFDDHQQQQQRLQLHQNQSQQQLLLHGSHSSAFSSLLSQGLASQIKQQRDEIDQFLQAQGEQLRRTLAEKRQKHYNALLGAAEEAVARRLREKEAEVEKATRKNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQTMCQGGEEAAAGVSCAVEGQAEDAESAHIDPERVVLAVARPKCRGCTKRVASIVVLPCRHLCICTECDAHFRACPVCLTPKNSTVEVFLS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2338 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 347 IPR013083 -
Pvu3g2338 347 PIRSF SBP1_RNase_bind 1 347 IPR017066 -
Pvu3g2338 347 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 346 IPR017066 -
Pvu3g2338 347 Pfam Zinc finger, C3HC4 type (RING finger) 299 339 - -
Pvu3g2338 347 Coils Coil 199 261 - -
Pvu3g2338 347 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 346 - -
Pvu3g2338 347 ProSiteProfiles Zinc finger RING-type profile. 300 334 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2338 Pvu-Chr3 44699656 44701692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2338 300 347 Miscellaneous Gene Families AT2G21380 33.333 7.96e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2338 K19042 - gmx:100788924 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2338 3 44699656 44701692 Pvu3g2338 3 44699656 44701692 ECH
Pvu2g0027 2 270280 271875 Pvu3g2338 3 44699656 44701692 PCT