Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2329 ATGTACAAAGAAAGAGGAGGTGTTTCCGTCACTGTTTCTGCTTCCAAATCGGAGGATCGGAAGCGAATCAACGACGTTCTCGACAAGCACCTCGAACGATCCTCTCCTTCCACTTCTCGCCCCATCAACGCCACCTCCAAAAATTCCAACCTCCAAGCTGAGGAATCTGAAACGGAGAGTGAAGAGTCCGATGTTAGCGGTTCGGATGGAGATGACACCTCTTGGATCTCCTGGTTCTGCAATCTCAGGGGAAACGAGTTCTTTTGCGAGGTTGATGATGATTACATCCAGGATGACTTCAACCTCTGTGGATTGAGCAGTCAAGTGCCCTACTATGATTATGCCCTTGATTTGATTCTCGATGTCGAATCATCCCATGGTGACATGTTCACGGAAGAACAGAATGAGTTGATTGAATCAGCGGCGGAAATGCTTTACGGTTTGATTCATGCCAGATATGTGTTGACCAGCAAAGGAATGGCTGCCATGCTTGACAAATACAAGAACTATGATTTTGGTAGATGCCCGAGAGTTTACTGCTCTGGACAGCCCTGCCTTCCAGTTGGCCAGTCAGACATTCCTAGGGCAAGTACTGTAAAAATATACTGCCCTAGGTGTGAAGATCTTTACTATCCTCGCTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACAACATTTCCACACCTCTTCTTGATGACATATGGACAACTGAAACCACAGAAACCATCACAAGGCTATGTTCCAAGAGTTTTTGGGTTCAAAGTTCATAAGCCATAA 786 0.4555 MYKERGGVSVTVSASKSEDRKRINDVLDKHLERSSPSTSRPINATSKNSNLQAEESETESEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRASTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQGYVPRVFGFKVHKP* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2329 261 ProSitePatterns Casein kinase II regulatory subunit signature. 175 206 IPR000704 GO:0005956|GO:0019887
Pvu3g2329 261 Pfam Casein kinase II regulatory subunit 74 257 IPR000704 GO:0005956|GO:0019887
Pvu3g2329 261 PRINTS Casein kinase II regulatory subunit family signature 74 90 IPR000704 GO:0005956|GO:0019887
Pvu3g2329 261 PRINTS Casein kinase II regulatory subunit family signature 91 105 IPR000704 GO:0005956|GO:0019887
Pvu3g2329 261 PRINTS Casein kinase II regulatory subunit family signature 146 167 IPR000704 GO:0005956|GO:0019887
Pvu3g2329 261 PRINTS Casein kinase II regulatory subunit family signature 171 192 IPR000704 GO:0005956|GO:0019887
Pvu3g2329 261 PRINTS Casein kinase II regulatory subunit family signature 193 214 IPR000704 GO:0005956|GO:0019887
Pvu3g2329 261 PRINTS Casein kinase II regulatory subunit family signature 221 238 IPR000704 GO:0005956|GO:0019887
Pvu3g2329 261 Gene3D - 172 246 - -
Pvu3g2329 261 MobiDBLite consensus disorder prediction 15 35 - -
Pvu3g2329 261 MobiDBLite consensus disorder prediction 36 53 - -
Pvu3g2329 261 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 67 171 IPR016149 GO:0005956|GO:0019887
Pvu3g2329 261 PANTHER CASEIN KINASE II SUBUNIT BETA 45 260 IPR000704 GO:0005956|GO:0019887
Pvu3g2329 261 PANTHER CASEIN KINASE II SUBUNIT BETA 1 44 IPR000704 GO:0005956|GO:0019887
Pvu3g2329 261 MobiDBLite consensus disorder prediction 1 70 - -
Pvu3g2329 261 SUPERFAMILY Casein kinase II beta subunit 72 260 IPR035991 GO:0005956|GO:0019887
Pvu3g2329 261 SMART CK_II_beta_2 74 257 IPR000704 GO:0005956|GO:0019887
Pvu3g2329 261 PANTHER CASEIN KINASE II SUBUNIT BETA 45 260 - -
Pvu3g2329 261 PANTHER CASEIN KINASE II SUBUNIT BETA 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2329 Pvu-Chr3 44623411 44626297 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2329 K03115 - gmx:100793573 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2329 3 44623411 44626297 Pvu3g2329 3 44623411 44626297 ECH
Pvu2g0025 2 236171 239465 Pvu3g2329 3 44623411 44626297 PCT