Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0025 ATGTACAGAGAGCGAGGAGTGGGATCTAAATCGGAGGTAACTTCCGCTGATCGGAAGCGAATCAACGACGTCCTCGATAAACAGCTCGAACGATCCTCGCCGTCCACATCCAGAGCCGCAGCCATCAACGGCAAGGACCGCTCATCCTCCACTTCCCTCTTAGCCGCCGCCAAGGACTCCCGCTCCGCCTCCGTCACCGCCCCTATCTCCAAGAATTCCAACGCTTCCGACGAAGAGTCTGAAACAGACAGCGAGGAGTCTGATGTTAGCGGTTCCGATGGAGATGACACGTCTTGGATCTCGTGGTTCTGCAATTTGAGAGGAAATGAGTTCTTTTGCGAGGTTGATGACGATTACATCCAGGACGACTTCAACCTATGCGGATTAAGCAGTCAAGTGCCTTACTATGATTATGCTCTGGATTTGATTTTGGATGTTGAATCCTCCCATGGTGACATGTTTACCGAGGAACAAAATGAGTTAATTGAATCGGCAGCCGAGATGCTTTATGGTCTGATTCATGCCCGGTACATATTGACAAGCAAAGGAATGGCTGCAATGCTGGACAAGTACAAGAACTATGATTTTGGCAGATGCCCAAGAGTTTACTGCTCTGGACAACCTTGTATTCCAGTTGGTCAGTCAGACATCCCTAGATCCAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGACATTTACTATCCTCGGTCCAAGTATCAAGGCAACATTGACGGAGCTTATTTTGGAACTACTTTTCCTCATCTGTTCCTCATGACTTATGGACAACTCAAACCACAGAAACCATCACAGAGCTATGTTCCAAGAGTTTTTGGCTTCAAACTTCACAAGCCTTGA 858 0.4755 MYRERGVGSKSEVTSADRKRINDVLDKQLERSSPSTSRAAAINGKDRSSSTSLLAAAKDSRSASVTAPISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCIPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQSYVPRVFGFKLHKP* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0025 285 MobiDBLite consensus disorder prediction 28 75 - -
Pvu2g0025 285 SUPERFAMILY Casein kinase II beta subunit 96 284 IPR035991 GO:0005956|GO:0019887
Pvu2g0025 285 MobiDBLite consensus disorder prediction 1 94 - -
Pvu2g0025 285 SMART CK_II_beta_2 98 281 IPR000704 GO:0005956|GO:0019887
Pvu2g0025 285 ProSitePatterns Casein kinase II regulatory subunit signature. 199 230 IPR000704 GO:0005956|GO:0019887
Pvu2g0025 285 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 91 195 IPR016149 GO:0005956|GO:0019887
Pvu2g0025 285 Pfam Casein kinase II regulatory subunit 98 281 IPR000704 GO:0005956|GO:0019887
Pvu2g0025 285 PANTHER CASEIN KINASE II SUBUNIT BETA 1 284 IPR000704 GO:0005956|GO:0019887
Pvu2g0025 285 PRINTS Casein kinase II regulatory subunit family signature 98 114 IPR000704 GO:0005956|GO:0019887
Pvu2g0025 285 PRINTS Casein kinase II regulatory subunit family signature 115 129 IPR000704 GO:0005956|GO:0019887
Pvu2g0025 285 PRINTS Casein kinase II regulatory subunit family signature 170 191 IPR000704 GO:0005956|GO:0019887
Pvu2g0025 285 PRINTS Casein kinase II regulatory subunit family signature 195 216 IPR000704 GO:0005956|GO:0019887
Pvu2g0025 285 PRINTS Casein kinase II regulatory subunit family signature 217 238 IPR000704 GO:0005956|GO:0019887
Pvu2g0025 285 PRINTS Casein kinase II regulatory subunit family signature 245 262 IPR000704 GO:0005956|GO:0019887
Pvu2g0025 285 MobiDBLite consensus disorder prediction 1 27 - -
Pvu2g0025 285 Gene3D - 196 270 - -
Pvu2g0025 285 PANTHER CASEIN KINASE II SUBUNIT BETA-2 1 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0025 Pvu-Chr2 236171 239465 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0025 K03115 - gmx:100799304 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0025 2 236171 239465 Pvu2g0025 2 236171 239465 ECH
Pvu2g0025 2 236171 239465 Pvu3g2329 3 44623411 44626297 PCT
Pvu3g2327 3 44607198 44611554 Pvu2g0025 2 236171 239465 PCT