Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2262 ATGGCGACAAAGAGCTACTTCAAACAAGAGCATGATCTTGAGAAGAGAAGAGCCGAGGCTGCTAGAATCAGGGAGAAATACCCAGACCGTATCCCTGTGATTGTGGAGAAAGCAGAAAGAAGTGATATTCCAAGTATTGACAAGAAGAAGTACCTTGTCCCCGCTGATCTGACAGTTGGACAATTTGTCTATGTTATCCGCAAAAGGATTAAATTAAGTGCAGAGAAGGCAATATTTATCTTTGTAGACAACGTGCTTCCACCTACAGGAGCAATTATGTCTGCTATATATGAGGAGAAGAAAGAAGAGGATGGGTTTCTTTATGTTACTTATAGTGGGGAGAACACCTTTGGGGATCTGACTTCCCAGTAG 372 0.422 MATKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKEEDGFLYVTYSGENTFGDLTSQ* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2262 123 CDD Ubl_ATG8 13 115 - -
Pvu3g2262 123 Gene3D - 1 118 - -
Pvu3g2262 123 SUPERFAMILY Ubiquitin-like 4 118 IPR029071 -
Pvu3g2262 123 PANTHER AUTOPHAGY-RELATED PROTEIN 3 118 - -
Pvu3g2262 123 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 3 118 IPR004241 -
Pvu3g2262 123 Pfam Autophagy protein Atg8 ubiquitin like 15 118 IPR004241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2262 Pvu-Chr3 43663785 43667196 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2262 K08341 - gmx:100818620 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2262 3 43663785 43667196 Pvu3g2262 3 43663785 43667196 ECH
Pvu2g0643 2 6879123 6882733 Pvu3g2262 3 43663785 43667196 PCT