Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0643 ATGTCAAGGAGCTACTTCAAACAAGAGCATGATCTTGAGAAGAGAAGAGCAGAGGCTGCCAAGATTAGGGAAAAATACCCAGACAGGATACCGGTTATTGTGGAGAAGGCAGAAAGAAGTGACATTCCAAGTATCGACAAGAAAAAGTACCTTGTCCCTGCTGACCTGACTATTGGACAGTTAGTCTACGTCATCCGCAAAAGGATCAAACTAAGTGCAGAAAAGGCAATCTTTATATTTGTGGACAACGTCCTTCCTCCTACAGGAGCAATTATGTCTGCCATATATAATGAGAAGAAGGATGAGGATGGGTTTCTCTATGTTACATACAGTGGCGAGAACACCTTTGGGGATTTCAATTCCATTGAGCAGCCCTTACAAATTAACAGCATATGA 396 0.4217 MSRSYFKQEHDLEKRRAEAAKIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTIGQLVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYNEKKDEDGFLYVTYSGENTFGDFNSIEQPLQINSI* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0643 131 Gene3D - 1 117 - -
Pvu2g0643 131 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Pvu2g0643 131 PANTHER AUTOPHAGY-RELATED PROTEIN 1 117 - -
Pvu2g0643 131 CDD Ubl_ATG8 12 114 - -
Pvu2g0643 131 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 117 IPR004241 -
Pvu2g0643 131 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0643 Pvu-Chr2 6879123 6882733 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0643 K08341 - gmx:100781703 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0643 2 6879123 6882733 Pvu2g0643 2 6879123 6882733 ECH
Pvu2g0643 2 6879123 6882733 Pvu3g2262 3 43663785 43667196 PCT