Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2172 ATGTGTATCACCATCGTGTCCAATAGAGATCTTATAAGCTTGTCAGTGCAGTTACAGAGAAAGAACGGGAGAGAGATAAAGAGAGTAATGGCAATGGCAACGATGCAAGAGAGTCCTCGGAGCCCGGAAGCGAAATTGGGTCTGCGAGTTGAGGATCTTTGGGACGTGCAAGAGGCACAGCTAAGTCCTACTGAGAAGCTCAACGCTTGTTTTGAAAGCATCCCTGTCTCTGCGTTTCCTTTGGCTCCTTCAAATCAAGAAATTGAGATAAAATCAGACGCCACCCTGGCCGAAGCTGTTATGAAACTGGCACGGCACAATGTTTTCAGTGCACCTGTGGTGGATGTTGATGCGCCTGAAGATGCTACTTGGATTGACAGATACATCGGAATTGTTGAGTTTGCTGGAATTGTTGTATGGATCTTGCATCAGTCTGAACCTGCATCTCCTAGGAGTCCATCTACTCCAACCAGTGCAAGGGCTATTGCAGCTGCTGCTAATGGAGTGAGTTTTGCTCTAGAACTTGAAGCCTTAGGCCTTGGATCTGCTGCAGCAACTTCGGGAAACTTTTTTGAGGATCTTACTTCATCTGAACTTTATAAGAATACCACGGTTCGTGACATTTCAGGGACATTCCGCTGGGCCCCATTTCTCGCTTTAGAGAGATCAAACTCATTTCTAACCATGCTCTTGCTGCTTTCTAAGTACAAGATGAAGAGTGTTCCTGTGTTGGATTTAGGCTCTGGTACAATTGATAAGATTATTACACAATCTGCTGTTATTCATATGCTGGCAGAATGCGCTGGACTTCAGTGGTTTGAAAGTTGGGGAACCAAAAAACTATCTGAAGTTGGTCTTCCCCTGGTTACACCAGATCAGATCATAAAGGTTTATGAGGATGAACCAGTCCTTCAAGCATTTAAAGTAATGAGAAAAAAGAGGGTGGGAGCGGTGCCTGTAATTGAGAGAGATGGCAAAAAGGCAGTTGGTAACATAAACTTGCGAGATGTTCAATTCTTGCTAAATGCTCCAGAAATATACCATGATTATAGAGCTATTACAGTAAAGGACTTCCTGACAGCCGTTAGAAGTTACTTGGAGAAAAATAAAAACGCATTCCCAATGGTAAGTGAATATGTTACATGCAGAAAGGACTGTACAATCAAAGAGTTGATTCAATTGCTTGATCAAGAGAAGATTCATAGGGTGTATGTGGTGGACGATGATGGGGATCTGCAAGGATTAATCACACTAAGAGACATAATCTCAAGACTAGTACACGAACCCCGTGGCTATTTTGGTGATTTCTTTGATGGTGTTCTACCTCTGCCTGCAAACACCAGAGTTTAA 1350 0.4319 MCITIVSNRDLISLSVQLQRKNGREIKRVMAMATMQESPRSPEAKLGLRVEDLWDVQEAQLSPTEKLNACFESIPVSAFPLAPSNQEIEIKSDATLAEAVMKLARHNVFSAPVVDVDAPEDATWIDRYIGIVEFAGIVVWILHQSEPASPRSPSTPTSARAIAAAANGVSFALELEALGLGSAAATSGNFFEDLTSSELYKNTTVRDISGTFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVLDLGSGTIDKIITQSAVIHMLAECAGLQWFESWGTKKLSEVGLPLVTPDQIIKVYEDEPVLQAFKVMRKKRVGAVPVIERDGKKAVGNINLRDVQFLLNAPEIYHDYRAITVKDFLTAVRSYLEKNKNAFPMVSEYVTCRKDCTIKELIQLLDQEKIHRVYVVDDDGDLQGLITLRDIISRLVHEPRGYFGDFFDGVLPLPANTRV* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2172 449 CDD CBS_pair_SF 90 149 - -
Pvu3g2172 449 Gene3D - 278 428 IPR046342 -
Pvu3g2172 449 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 32 449 - -
Pvu3g2172 449 CDD CBS_pair_SF 230 337 - -
Pvu3g2172 449 ProSiteProfiles CBS domain profile. 83 149 IPR000644 -
Pvu3g2172 449 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1-RELATED 32 449 - -
Pvu3g2172 449 SUPERFAMILY CBS-domain pair 59 265 IPR046342 -
Pvu3g2172 449 SUPERFAMILY CBS-domain pair 280 435 IPR046342 -
Pvu3g2172 449 CDD CBS_pair_SF 292 422 - -
Pvu3g2172 449 Gene3D - 55 270 IPR046342 -
Pvu3g2172 449 SMART cbs_1 378 426 IPR000644 -
Pvu3g2172 449 SMART cbs_1 293 342 IPR000644 -
Pvu3g2172 449 SMART cbs_1 86 142 IPR000644 -
Pvu3g2172 449 ProSiteProfiles CBS domain profile. 375 433 IPR000644 -
Pvu3g2172 449 Pfam CBS domain 293 337 IPR000644 -
Pvu3g2172 449 Pfam CBS domain 375 426 IPR000644 -
Pvu3g2172 449 ProSiteProfiles CBS domain profile. 289 350 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2172 Pvu-Chr3 42563269 42566818 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2172 - - gmx:100812388 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2172 3 42563269 42566818 Pvu3g2172 3 42563269 42566818 ECH
Pvu3g2172 3 42563269 42566818 Pvu9g1722 9 24348693 24352355 PCT