Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1896 ATGAGGTGGGAAAAGGTTGAGGTGAAGGCGATAGGCACAGAGGGTGGTGAAGGTGGGAATGAGGTGTATGGGCCAGGGAAGAGGTGGGGTCACACCTGCAACGCCGTCAAAGGTGGCAGACTTGTCTATGTCTTCGGTGGATACGGCAAAGATAACTGTCAGACCAACCAAGTTCATGTCTTTGACACTGTGAAGCAGACTTGGAGCCAACCTACTCTAAAAGGCTCCCCACCTACCCCTAGGGACAGCCACACTTGCACAGCCATTGGTGATAATCTGTTTGTGTTTGGGGGTACAGATGGGATGAATCCTCTCAAGGATTTGCACATATTAGACACTTCGTTGCATACATGGGTTTCTCCCACCATAAGAGGAGAAGGGCCACCAGCACGTGAGGGTCATAGTGCAGCAGTTGTTGGAAAACGCCTATTCATATTTGGTGGTTGTGGAAAATCTTCAGATAGTAATAATGAGGTCTACTACAACGACCTTTACATATTAAATACAGAGACATTTGTCTGGAAGTGTGCTACAACATCAGGCTCTCCACCGTCTCCTCGTGATAGCCACTCTTGTTCATCTTGGAAAAATAAAATTATTGTAATAGGAGGTGAAGATGGACATGATTATTATTTGTCTGATGTCCATATCCTTGATACTGATACTTTAATCTGGAGGGAGCTGAGTGCATCAGGCCAATTGTTGCCTCCTCGAGCTGGTCATTCGACTGTTTCTTTTGGCAAGAACTTGTTCGTTTTTGGGGGATTTACAGATGCCCAAAATCTCTATAATGACCTTTATATGCTTGATATTGACACTGGTGTTTGGACAAATGTTACATCTGCAACCAATGGTCCTTCTGCTAGATTTTCTGTGGCTGGTGACTGTTTAGACCCTTTCAAGGGGGGTGTTCTTGTATTCATAGGTGGTTGTAATAAAAGTCTTGAAGCCCTGGATGATATGTATTACCTATATACAGGGATTGCTCGGGAAAGTGAACAGAGACCAGAGAAGTTATCTTTAAGGAAGCAATTGAAACTGAAGTGCCAAGAACAAAATCCCAATCCTGGCCAAAATCAAGTTCTAGTAAGATATGGTGTGGGTTCTGATATGGGCCAGATCATGTCAGTGTTGAATTATAGCCAGCCAAGTAGGCTAAATATCCCAGTAAATCAATCCCTACCTCCTGGAAAGAAAATGTTTGAAGCCAAGGTCACTGAGAACATCTCAGAAGGATATACTATTGAAACTGTTATTGATGGAAAGCCTCTTCGTGGAATACTGTTTTTAAACAAGCCAAACACTCTGTACTCAGCTGCTCAGACTACCAGTAGCAGGAAAAGGACTCTTGGTGAAATTGATGGTGTTGTCTCGAATGGTACACACTCTAACCAATTAAAGACTCCTAAATTACCTAAGCAAAATCAAATGGAAAACCAAGAAGCATTTTGTGGAGATAGTTCAGAATCTCATGAACACCGCACTGAACCCATTCCAGTGGTAATGTCAAGTAACCCAATGACTGCCGATGCCTCTGATACCCATAAGGTTTCTGCCAACCCAGAACCAGAAGCTGCTGCTTTGAATCAGAACGATGAAAAACATGAAACACCCATATCCTTGAGTGGAAACTTGAAAAAAGCAAATGACGTGACAAGTTCCAAAGATGAGGTGCAAACAAATGATCAAACAAATGTGCTAATTTCCAACTTCGAAGTTACAAGACATGATACAAAATTTGATGCTCCAAATTACAACACTGAATTTCAGAAACCTGCTGCATCTGAGAGTGCTTTCTGCCTGTCAAATCAAGCCGCGGATTCCACAACTCCAACAAGAGAATGCAGCGAAGCAGCAAAATTAATTTGA 1869 0.427 MRWEKVEVKAIGTEGGEGGNEVYGPGKRWGHTCNAVKGGRLVYVFGGYGKDNCQTNQVHVFDTVKQTWSQPTLKGSPPTPRDSHTCTAIGDNLFVFGGTDGMNPLKDLHILDTSLHTWVSPTIRGEGPPAREGHSAAVVGKRLFIFGGCGKSSDSNNEVYYNDLYILNTETFVWKCATTSGSPPSPRDSHSCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLIWRELSASGQLLPPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLYMLDIDTGVWTNVTSATNGPSARFSVAGDCLDPFKGGVLVFIGGCNKSLEALDDMYYLYTGIARESEQRPEKLSLRKQLKLKCQEQNPNPGQNQVLVRYGVGSDMGQIMSVLNYSQPSRLNIPVNQSLPPGKKMFEAKVTENISEGYTIETVIDGKPLRGILFLNKPNTLYSAAQTTSSRKRTLGEIDGVVSNGTHSNQLKTPKLPKQNQMENQEAFCGDSSESHEHRTEPIPVVMSSNPMTADASDTHKVSANPEPEAAALNQNDEKHETPISLSGNLKKANDVTSSKDEVQTNDQTNVLISNFEVTRHDTKFDAPNYNTEFQKPAASESAFCLSNQAADSTTPTRECSEAAKLI* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1896 622 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 569 - -
Pvu3g1896 622 SUPERFAMILY Galactose oxidase, central domain 24 246 IPR011043 -
Pvu3g1896 622 PANTHER KELCH REPEAT DOMAIN 1 569 - -
Pvu3g1896 622 Pfam Galactose oxidase, central domain 237 283 - -
Pvu3g1896 622 Pfam Galactose oxidase, central domain 186 230 - -
Pvu3g1896 622 SMART kelc_smart 92 141 IPR006652 GO:0005515
Pvu3g1896 622 SMART kelc_smart 41 91 IPR006652 GO:0005515
Pvu3g1896 622 SMART kelc_smart 249 295 IPR006652 GO:0005515
Pvu3g1896 622 SMART kelc_smart 198 248 IPR006652 GO:0005515
Pvu3g1896 622 SUPERFAMILY Galactose oxidase, central domain 208 316 IPR011043 -
Pvu3g1896 622 Pfam Galactose oxidase, central domain 40 89 - -
Pvu3g1896 622 Pfam Kelch motif 128 172 - -
Pvu3g1896 622 Gene3D - 231 329 IPR015915 GO:0005515
Pvu3g1896 622 Gene3D - 15 230 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1896 Pvu-Chr3 39538540 39545385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1896 55 314 Acyl Lipid Metabolism Gene Families AT3G05420 29.964 3.36e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1896 - - gmx:100820222 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1896 3 39538540 39545385 Pvu3g1896 3 39538540 39545385 ECH
Pvu3g1896 3 39538540 39545385 Pvu9g2092 9 30016556 30022882 PCT