Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1686 ATGTCCATAAACGTTCATTCCCATGCCTTCGCCGGCAACCCTCTTCTCTCCAAATTCTCACTTTCAGGCCACCCCCTTCCACCCTCTTCAGCTCTTGAAGCCCTCAACGTGCGAATTGGTCAACCAAATACTCATTCGTATCCCTCCCTGAGCTTCAAGGTACTACCTTTCCGAAATGGGAGGCCCTTGGCTTCTTCCGAGACCAGCTCCGGCGACTCGCCGCCGATTTGGCATCTGGGTTGGCTCGGCTTGGACGATCTCAGGGTTATTTACGACAATTCCGGTGCCCAGTTGAGTGTGGACTCGTTGGTGTATCTGAATTCGAGTGCAGAGGACGACGCCGTTTACTGGGCAATCGATGTTTCTGCTGAGGCAATTGAATTGGGTAGCAAAACGGGTTTGCGTTTTGTGGAGCTTCGAACTCTCATGGTGGCTACCGACTGGTCGGATTTGCAAGCAATGGGAAACTTGGCTATTGCTGGTCATGCTAAGGCACTGCTAGAATGGCATAATATTTCACGATTTTGTGGACATTGTGGTGAGAAAACAGTCCCTATGGAAGCTGGGAGACGGAAGCAATGTTCAAATGGTTCATGCAAAAAAAGATATACCCACGTGGTCATTATGCTTGTAATTGATAGAGAGAATGACCGTGCTCTTTTGGCTAAACGACCAATGCGTCTACATCGATTGTATACTTGTTTATCAGGTTTCACAGAGCCAGGAGAAAGCTTGGAGGAAGCTGTGAGAAGAGAAACATGGGAAGAGACTCGTGTTGAAGTGGGAGAAGTTGTATATCACAGTTCTCAGCCGTGGCCTGTTGGACCAAGTGGCATTCCATGCCAGTTGATGGTTGGGTTCTTTGCATATGCAAAATCCCTTGAAATAACTGTGGACAAGAAAGAGTTAGAAGATGCTCAGTGGTACAGTAGAGAAGATGTGAGAAAAGCATTGACGTTTGCTAAATACAAGGAAACCCAAAGAACTGCAGCAGAAAAGGTCGAACAAATATGTAAGGGACTAGAAGAGAACAGAAGCTTGGCTTCAGATTTCAACGTGGAAAGTGCTGGTGAAAATGCTCCAATAGTTTTCCCTGGACCTTTTGCAATAGCCCATCACCTTATTTCTTCTTGGGCCTTCTCAGATAAAAATGTAGTGCATCATTCAAGATAA 1173 0.4638 MSINVHSHAFAGNPLLSKFSLSGHPLPPSSALEALNVRIGQPNTHSYPSLSFKVLPFRNGRPLASSETSSGDSPPIWHLGWLGLDDLRVIYDNSGAQLSVDSLVYLNSSAEDDAVYWAIDVSAEAIELGSKTGLRFVELRTLMVATDWSDLQAMGNLAIAGHAKALLEWHNISRFCGHCGEKTVPMEAGRRKQCSNGSCKKRYTHVVIMLVIDRENDRALLAKRPMRLHRLYTCLSGFTEPGESLEEAVRRETWEETRVEVGEVVYHSSQPWPVGPSGIPCQLMVGFFAYAKSLEITVDKKELEDAQWYSREDVRKALTFAKYKETQRTAAEKVEQICKGLEENRSLASDFNVESAGENAPIVFPGPFAIAHHLISSWAFSDKNVVHHSR* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1686 390 Pfam NADH pyrophosphatase-like rudimentary NUDIX domain 54 169 IPR015375 GO:0016787
Pvu3g1686 390 PANTHER NUDIX FAMILY HYDROLASE 1 384 - -
Pvu3g1686 390 Pfam NUDIX domain 205 323 IPR000086 -
Pvu3g1686 390 PANTHER NUDIX HYDROLASE, NUDC SUBFAMILY 1 384 - -
Pvu3g1686 390 Pfam NADH pyrophosphatase zinc ribbon domain 173 202 IPR015376 GO:0016787|GO:0046872
Pvu3g1686 390 Gene3D - 82 203 - -
Pvu3g1686 390 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 204 343 - -
Pvu3g1686 390 ProSiteProfiles Nudix hydrolase domain profile. 202 331 IPR000086 -
Pvu3g1686 390 ProSitePatterns Nudix box signature. 237 258 IPR020084 GO:0016787
Pvu3g1686 390 SUPERFAMILY Nudix 157 324 IPR015797 -
Pvu3g1686 390 Coils Coil 324 344 - -
Pvu3g1686 390 CDD NADH_pyrophosphatase 206 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1686 Pvu-Chr3 37086079 37089446 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1686 K03426 - gmx:100793335 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1686 3 37086079 37089446 Pvu3g1686 3 37086079 37089446 ECH
Pvu3g1686 3 37086079 37089446 Pvu9g2036 9 29180113 29185231 PCT