Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1500 ATGGCTATGGCAGTTGGAAATACAACAAATCCAGAAGAACTACAGATAGTGATTCATAGATTTGGTTCAGTTGAATGCAGAAGTCCTTCATGTGATCTATTACAGAATACAAGGGATTATGTGAAGAAATGTGCTCCCATTTACAACCTTGCAATTAAAGGAGACTGGAAAGAAGCTAGAAGCATGTTATTGGCAGATAGCAGGTTGAAAACTGCTGCCATTTCACAGGGATGGGCCACACTGCTTCACGTAGCAGCAGAAGCAAATCAATTGTACTTCGTAGAGGAGCTGGTGAATCAACTCAACCCAAATGACTTGGAAATACAAGACTTCAAAGGCAACACAGCTTTCTGCTTTGTTGCAGCAGTTGGCAATGTAGAAATTGCAGAAGCAATGGCCCGAAGAAATACTAGTTTGCCAACTATAAGAGGAGGAGAAGGACTCACCCCTCTTCACTTCGCTGCTTTACAGGGAAAAACTGAAATGGCATGGTATCTATATCCTCGTACATTTCACATTTTCAATGGTGAAGATTGGGATTTATTGTTCTTTCTTTGTATCAACACTGCCATTTATGATTTAGCTTTAAAGATGTTAGAAGATAATCCAAAGTTAGCTGTGGCTCGGAATGAGAACAAGGAAACAGCCTTGCATGTTTTGGCACGAAAATCTTCTGCTTTTAGTTGTCAAGGTCGAAGGTATCCAAATCAGTTCATGAACTCACGTAAGAATCCAAGTTTGGCTCTCCAACTTGTAAGGTGTCTTTGGAATGCCCTTCTTTCTCTTGATTGCGCAGGGATGCAAATGATAAGAGTCATAAGCGAGCCGTCTCATGTAATATTCATTGCCGCTGAAGGAGGAAATTTTGAGATTTTAGCTGAGTTGATTACATCTTACCCAGATCTCACATGGGAAGTTGATGCCCAAAATCGAAGCATTATTCACATTGCTGTTTTGCATCGCCATGCAGCCATATTTAATCTCATACATGAAATAAGATCTATCAGGAATTTTGTTGTAACATACGAGGATGCAGATCAAAACAACTTACTGCATTGTGCTGCAAAATTAGCACCACCAAATCAACTTAACTTGGTGTCTGGAGCAGCTTTTCAGATGATGCACGAGTTACGGTGGTACGAGGAGGTGAAGAAGGTCATGCCACCTTGTCTCATAGAGAAGAGAAATTCCAATGGTAAAACTCCTCGTGAACTTTTCACTGAAGAGCATGCAGAGTTACTGACAAAAGCAGAATCTTGGATGAAGAGCACGGCAAAATCTTGCATGATAGTTTCAACACTTATTGCTACAGTAGTGTTCACTGCAGCATTCAGCATTCCACGTGGTGATGATGATAAAAGTGGAAACCCCAACTGCAATGCTATCATCTTCATAATATTTGCAATCTCAGATGCAACTTCACTAATCTCATCTTCAATCTCAATTCTTATTTTCTTGTCAATGCTTACCATAGCACGTTATGCAGAGGATGACTTCTTCATGTCACTGCCAATGAAGCTTATATGTGGACTGCTAACACTGTTTATCTCCATAGCAGGCATGATGGTGGCATTTAGCAGTGCCTTCTTCATAACATATTCCCATGGCCTAAAATGGGTGTCAATCTTCATTTCTGTACTTGCACTTGCACCAATCACATTGTTCACATTTCTTCTGTTTCCCTTATGGTCAGACATTGTTTACTCAGCCTATTTCTCTAGGTCTATATTTCGGCCAAATAAGCACGTTCTTTACTGA 1758 0.4033 MAMAVGNTTNPEELQIVIHRFGSVECRSPSCDLLQNTRDYVKKCAPIYNLAIKGDWKEARSMLLADSRLKTAAISQGWATLLHVAAEANQLYFVEELVNQLNPNDLEIQDFKGNTAFCFVAAVGNVEIAEAMARRNTSLPTIRGGEGLTPLHFAALQGKTEMAWYLYPRTFHIFNGEDWDLLFFLCINTAIYDLALKMLEDNPKLAVARNENKETALHVLARKSSAFSCQGRRYPNQFMNSRKNPSLALQLVRCLWNALLSLDCAGMQMIRVISEPSHVIFIAAEGGNFEILAELITSYPDLTWEVDAQNRSIIHIAVLHRHAAIFNLIHEIRSIRNFVVTYEDADQNNLLHCAAKLAPPNQLNLVSGAAFQMMHELRWYEEVKKVMPPCLIEKRNSNGKTPRELFTEEHAELLTKAESWMKSTAKSCMIVSTLIATVVFTAAFSIPRGDDDKSGNPNCNAIIFIIFAISDATSLISSSISILIFLSMLTIARYAEDDFFMSLPMKLICGLLTLFISIAGMMVAFSSAFFITYSHGLKWVSIFISVLALAPITLFTFLLFPLWSDIVYSAYFSRSIFRPNKHVLY* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1500 585 ProSiteProfiles Ankyrin repeat profile. 146 166 IPR002110 GO:0005515
Pvu3g1500 585 PANTHER CASKIN 8 585 - -
Pvu3g1500 585 Gene3D - 37 169 IPR036770 -
Pvu3g1500 585 Pfam Ankyrin repeats (3 copies) 82 167 IPR002110 GO:0005515
Pvu3g1500 585 ProSiteProfiles Ankyrin repeat region circular profile. 146 166 - -
Pvu3g1500 585 Gene3D - 185 429 IPR036770 -
Pvu3g1500 585 PANTHER ANKYRIN REPEAT PROTEIN 8 585 - -
Pvu3g1500 585 Pfam Domain of unknown function 419 531 IPR026961 -
Pvu3g1500 585 SUPERFAMILY Ankyrin repeat 46 224 IPR036770 -
Pvu3g1500 585 SUPERFAMILY Ankyrin repeat 279 360 IPR036770 -
Pvu3g1500 585 SMART ANK_2a 146 175 IPR002110 GO:0005515
Pvu3g1500 585 SMART ANK_2a 77 105 IPR002110 GO:0005515
Pvu3g1500 585 SMART ANK_2a 112 141 IPR002110 GO:0005515
Pvu3g1500 585 SMART ANK_2a 309 338 IPR002110 GO:0005515
Pvu3g1500 585 SMART ANK_2a 275 304 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1500 Pvu-Chr3 34194667 34198110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1500 42 579 Miscellaneous Gene Families AT1G34050 23.183 1.11e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1500 - - gmx:100814943 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2486 9 35335969 35341254 Pvu3g1500 3 34194667 34198110 PCT