Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1405 ATGGCGAGTCTGCTTCGTAACATTTCCTTTCTCACACGCTCGCTATTCGTCCCTAAGGGCTTTGAGCTGGGATTATTTAGCACTTCTCATATTTTGAGCTTTTCATCTAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCTGGTGAAGAAAACATGTCCAAGAAAGAGCTGGCACTTCAACAAGCTCTTGATCAAATCACTTCTGCATTTGGAAAGGGATCCATCATGTGGCTTGGTCGTTCTGTCTCACCAAAAAATGTGCCTGTTGTGTCTACAGGTTCTTTTGGTCTTGATATAGCACTAGGAATTGGTGGTCTTCCGAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTGATTGCAGAAGCACAGAAGCTCGGAGGTTATTGTGTCTTTGTTGATGCTGAGCATGCCCTTGATAAGACACTTGCAGAGTCTATTGGTGTGAACACAGCGAATTTGCTGTTCTCCCAACCCGATTGTGGTGAACAGGCACTTAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTCGACAGTGTGGCTGCACTTGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTAATGAGTCAGGCACTTCGAAAATTGAGCCATGCCTTGACACTTTCTCAAAGTATATTAATTTTTATAAATCAGGTGAGGTCAAAGATTTCAACTTTTGGGGGATTTAGTGGGCCTACGGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCTGTGCGTCTAAATATCAAGAGAACAGGTTTTGTCAAGAAGGGTGAAGAGATTTTAGGAAGCCAGATTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCGTTTAAAACTGCTGAATTTGAGCTTGAATTTGGCAAGGGGATATGTAAAGAAACAGAGATTATAGATTTAAGTGTACAACACAAACTAATCTTAAAGGCTGGTGCAATGTATTACTATAACGAACAGAATTTCCGCGGTAAGGATGCCCTAAAGAGTTTCCTAGCTGAGAAATATAGTGCATTAGAAGAACTTGAAACGAAGCTCAGAGAAAAGGTTCTTAATGTTGAGACAGAACAGACACAAGAATCAGATGTTACCGAAGGAATTGCATCAGTTAGTTCTACTCTGGAAGAAACACCTGTTGTAGAAGCATGA 1242 0.4171 MASLLRNISFLTRSLFVPKGFELGLFSTSHILSFSSKGRRRSKSDGSDSGEENMSKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFGLDIALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKLGGYCVFVDAEHALDKTLAESIGVNTANLLFSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHALTLSQSILIFINQVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRTGFVKKGEEILGSQILVKVVKNKLAPPFKTAEFELEFGKGICKETEIIDLSVQHKLILKAGAMYYYNEQNFRGKDALKSFLAEKYSALEELETKLREKVLNVETEQTQESDVTEGIASVSSTLEETPVVEA* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1405 413 PANTHER RECA 1 398 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu3g1405 413 MobiDBLite consensus disorder prediction 37 56 - -
Pvu3g1405 413 ProSiteProfiles RecA family profile 1. 88 247 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Pvu3g1405 413 MobiDBLite consensus disorder prediction 38 55 - -
Pvu3g1405 413 Pfam recA bacterial DNA recombination protein 60 323 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu3g1405 413 SMART AAA_5 110 284 IPR003593 -
Pvu3g1405 413 Hamap Protein RecA [recA]. 57 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu3g1405 413 Coils Coil 367 390 - -
Pvu3g1405 413 PRINTS RecA protein signature 146 175 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu3g1405 413 PRINTS RecA protein signature 180 209 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu3g1405 413 PRINTS RecA protein signature 218 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu3g1405 413 PRINTS RecA protein signature 266 294 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu3g1405 413 PRINTS RecA protein signature 299 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu3g1405 413 Gene3D - 87 391 IPR027417 -
Pvu3g1405 413 ProSiteProfiles RecA family profile 2. 255 328 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Pvu3g1405 413 MobiDBLite consensus disorder prediction 386 413 - -
Pvu3g1405 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 323 IPR027417 -
Pvu3g1405 413 MobiDBLite consensus disorder prediction 387 407 - -
Pvu3g1405 413 SUPERFAMILY RecA protein, C-terminal domain 325 380 IPR023400 -
Pvu3g1405 413 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 398 - -
Pvu3g1405 413 ProSitePatterns recA signature. 269 277 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Pvu3g1405 413 TIGRFAM tigrfam_recA: protein RecA 57 379 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu3g1405 413 CDD recA 56 383 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1405 Pvu-Chr3 32704395 32714120 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1405 K03553 - gmx:100781271 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1405 3 32704395 32714120 Pvu3g1405 3 32704395 32714120 ECH
Pvu3g1405 3 32704395 32714120 Pvu9g2393 9 34143604 34149542 PCT