Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1128 ATGCTAGTAGCATTGCTCTTGCTGCTGTCGCTAAGCAATGAAGTCAGAGTCAATGGTGATGGTGGTAGCAGACAGTGTGAGCATAATCCAGCACCAAAGCCAAGACCGCACACTGTCTCCATCTTGGAGTTTGGCGCGGTTGGGGATGGTAAAACGTTGAACACTATTGCATTCCAGAATGCCATCTTCTATCTCAAGTCATTTGCGGACAAGGGTGGTGCTCAGTTATATGTGCCACCAGGAACATGGTTGACTAAAAGTTTCAATCTTACTAGTCATCTGACACTCTTCTTGGAAAAAGGTGCTGTCATTCTTGGATCTCAGGATCCGTTTCACTGGGATGTTGTTGATCCATTACCTTCTTATGGTCGAGGAGTTGAAGTTCCAGGGGGGAGATATCAGAGTTTAATAAATGGATACATGTTAGATGATGTGGTGATAACAGGTAATAGTGGAATCATTGATGGCATGGGATTGGCATGGTGGGAGTTGTTTAACTCTCATTCCCTGAACTACAGCCGTCCACATATTATCGAATTAGTAGCATCTGATCATGTGGTTGTTTCAAATCTTACATTCTTGAATGCCCCTGCCTATAGCATCCACCCAGTTTACTGCAGCAATGTACATATTTACAATGTTTCAATCTCCGCTCCTCCAGAATCCCCTTATACGATTGGCATGGTACCAGATTCTTCTGATCATATTTGTATAGAGGATTGTGTCATTGAAACGGGCTATGATGCAATTGCCCTCAAAAGTGGCTGGGACGAATATGGCATTGCCTATGGCAGGCCAACTGAGAATGTACACATCAGAAGGGTGCATTTGCAAGCTTCTTCTGGCTCTACTATTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAATATTCTTGTGGAGAATGTTCATCTTTACAACTCGAGGAGTGGCATTGAATTCAGAACCATGAGGGGTAGAGGTGGTTATATGAAGGAAATCGTGATATCAGGGATAGAAATGGTGAATATATACACTGCAATGGCCGCCACAGGTTATTGTGGATCTCATCCTGATGACAAATTTGATCCCAATGCTCTTCCACTTTTGGACCACATTATTTTGCAAGATATGATTGGCACAAACATCACTATTGCTGGAAGCTTTGCCGGACTACAAGAATCTCCCTTCACAAACATATGCCTTTCCAATATAAATTTGTCTATAAATTCTGTTTCTTCCATTCCTTGGGAATGTTCAAATATCTCTGGATTTTCAGATTCAGTTCTTCCCAAACCATGTCCTGATCTTGAGACCCTTTCGGATTGTCTCTCCCTTCTGAGTATCAGAGGAAAAGCTGCGGACATGTGA 1350 0.4274 MLVALLLLLSLSNEVRVNGDGGSRQCEHNPAPKPRPHTVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTKSFNLTSHLTLFLEKGAVILGSQDPFHWDVVDPLPSYGRGVEVPGGRYQSLINGYMLDDVVITGNSGIIDGMGLAWWELFNSHSLNYSRPHIIELVASDHVVVSNLTFLNAPAYSIHPVYCSNVHIYNVSISAPPESPYTIGMVPDSSDHICIEDCVIETGYDAIALKSGWDEYGIAYGRPTENVHIRRVHLQASSGSTIAFGSDMSGGISNILVENVHLYNSRSGIEFRTMRGRGGYMKEIVISGIEMVNIYTAMAATGYCGSHPDDKFDPNALPLLDHIILQDMIGTNITIAGSFAGLQESPFTNICLSNINLSINSVSSIPWECSNISGFSDSVLPKPCPDLETLSDCLSLLSIRGKAADM* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1128 449 PANTHER PECTIN LYASE-RELATED 2 440 - -
Pvu3g1128 449 Pfam Pectate lyase superfamily protein 39 96 IPR024535 -
Pvu3g1128 449 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 2 440 - -
Pvu3g1128 449 Pfam Glycosyl hydrolases family 28 136 416 IPR000743 GO:0004650|GO:0005975
Pvu3g1128 449 SMART pbh1 267 289 IPR006626 -
Pvu3g1128 449 SMART pbh1 295 316 IPR006626 -
Pvu3g1128 449 SMART pbh1 183 205 IPR006626 -
Pvu3g1128 449 SMART pbh1 233 254 IPR006626 -
Pvu3g1128 449 Gene3D - 22 419 IPR012334 -
Pvu3g1128 449 SUPERFAMILY Pectin lyase-like 30 429 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1128 Pvu-Chr3 26962519 26965518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1128 1 442 Glycoside Hydrolase AT3G16850 60.497 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1128 - - gmx:100802343 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1128 3 26962519 26965518 Pvu3g1128 3 26962519 26965518 ECH
Pvu3g1128 3 26962519 26965518 Pvu9g2606 9 36532500 36535554 PCT