Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1106 ATGCTTGCACAACAGAAATCCCCAAAGACATACCCGACACTTCCCCAGGTATTGGAGGAAGTAAAGAGAATGTCAGACATAGGGTTCCCTATATCCGCCATGAGCCTTGTGGGGTACCTAAAAAACTTGACCTTAGTTGTGTGCATGGGAAGGTTGGGAAGCCTGGAATTAGCTGGAGGTTCTTTGGCAATAGGCTTCACCAACATAACTGGTTACTCTGTCCTCTCAGGTCTAGCCATGGGCATGGAACCCCTCTGCACCCAAGCCTTCGGTTCTAGAAACTTCTCCTTACTCTCTCTAACTTTGCAGAGAACAATTCTGATGTTACTGCTATTTTCTCTCCCCATTTCTCTTCTGTGGCTCAACCTCGAATCTCTCATGCTTTTCCTTCGCCAGAATCCAGACATAACCCGTGTAGCTACCCTCTATTGCCGCTTCGCCATCCCAGACCTCATAGTCAATAGCTTCCTCCACCCTCTTCGCATCTATCTACGCAGCAAAGGAACAACTTGGCCACTGTTGTGGTGCACTTTACTTTCCATTCTTCTACACCTTCCCACCATCGCCTTTTTAACCTTCAAACTCCACCTTGGGGTGCCGGGAATCGCTGTTTCATCCTTTGTTGCCAATTTTAACAACCTTTTTTTCCTTCTTCTGTACATGTTCTATACACGTGTTCCCAAGGAGTCCTTACACGTGCCATTACTACTGTCTCGTACCATTTCACATAATAACTTGATGACATGTAGAAGCAGTTGTAGTAGTCTTGCCATGGAATGGGGTGTGCTACTGAAATTTTCAATACAAAGTTGTCTAGCTGTTTGCTTGGAGTGGTGGTGGTACGAATTGATGACAATTTCCGCAGGCTACCTTCAGAACCCTCGTGTTGCTCTAGCCACGGCTGGCATAGTGATACAAACCACATCTCTTTTGTACACTTTGCCAACATCACTAAGTGCATCGGTGTCAACGAGAGTAGGGAATGAACTAGGGGCGGGGCAAGCTGAAAGAGCGAGTTTGGCAACGGTGGTAGCAATAGGATTATCACTTGCAAGCTCAATTTTTGGGTTATTGTGGACCACTATGGGAAGAGAAAGGTGGGGGAGAGTGTTCACTAGTGACGGTGAGGTGCTGCAATTGAGTATGGCAGTGTTACCTATAATTGGACTTTGTGAGTTAGCCAATTGTCCACAAACCACAAGCTGTGGAATCCTCAGAGGAAGTGCTAGGCCTGGTGTTGGGGCAGTTATAAACTTTTGCTCCTTTTATTTGGTGGGAGCACCAGTAGCCCTTGTTTTGGCCTTCGTTTGGAAACTTGGGATGGTGGGGCTGTGTTATGGGTTGTTGGCAGCACAGATCGCATGTGTGGTGTCAATTTTCATTGTCGTGTACAAAACTGATTGGGAAAGGGAGTCATTGAAAGCCAGAAGCTTGGTGGGAAAGGGTTTATGTGGCACTTTCGCATTTCATCAGGACCAAATCACGATCAAATGTGAAGAACATCTTGTCTTTCTCAAAGAGGACAACTCTGAAAAGTGA 1539 0.462 MLAQQKSPKTYPTLPQVLEEVKRMSDIGFPISAMSLVGYLKNLTLVVCMGRLGSLELAGGSLAIGFTNITGYSVLSGLAMGMEPLCTQAFGSRNFSLLSLTLQRTILMLLLFSLPISLLWLNLESLMLFLRQNPDITRVATLYCRFAIPDLIVNSFLHPLRIYLRSKGTTWPLLWCTLLSILLHLPTIAFLTFKLHLGVPGIAVSSFVANFNNLFFLLLYMFYTRVPKESLHVPLLLSRTISHNNLMTCRSSCSSLAMEWGVLLKFSIQSCLAVCLEWWWYELMTISAGYLQNPRVALATAGIVIQTTSLLYTLPTSLSASVSTRVGNELGAGQAERASLATVVAIGLSLASSIFGLLWTTMGRERWGRVFTSDGEVLQLSMAVLPIIGLCELANCPQTTSCGILRGSARPGVGAVINFCSFYLVGAPVALVLAFVWKLGMVGLCYGLLAAQIACVVSIFIVVYKTDWERESLKARSLVGKGLCGTFAFHQDQITIKCEEHLVFLKEDNSEK* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1106 512 PANTHER PROTEIN DETOXIFICATION 55 12 484 - -
Pvu3g1106 512 CDD MATE_eukaryotic 20 474 IPR045069 GO:0042910|GO:1990961
Pvu3g1106 512 Pfam MatE 30 187 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pvu3g1106 512 Pfam MatE 270 431 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pvu3g1106 512 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 484 - -
Pvu3g1106 512 TIGRFAM matE: MATE efflux family protein 40 444 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1106 Pvu-Chr3 26488917 26491271 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1106 K03327 - gmx:100798616 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1106 3 26488917 26491271 Pvu3g1106 3 26488917 26491271 ECH
Pvu3g1106 3 26488917 26491271 Pvu9g2585 9 36317774 36320026 PCT