Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1102 ATGGCCGTCGTAACTAACAACGGCAAGCGCCGCCAGCATTGGCTCTCCGGGAATCATCACCTTCCATCTCCCAATTCCAAAAGGCCCAGACTGTCAACAACATCCGAAAACCACGCGCACTCCGTGTTATCCTCGAGTAGTATCGTTTCCAGAATTTCCAAATATCCCGAAGCCAAGCCACTGATGCGTAGGGAGGTTCACGCGCCGTGTAGTTCCCGTAAGTTTGCTTTTCCTACCTCTAATAGAATGAAATCGAGCTTGAATGCTAGTAGTAGCTATTGTGATCGCAAGGAAGATATTGGTAACGATGTGGGCAACATGCTAAGTGAAAATTACGAAAGGGCGAAAAATTCAGCCTTAGCTAGCATTCGGTTTGGGGAAAAGGGTAAGGAGGTGAATGAAGCGGATGATGATAGTCCCAAGGGCATGGTTTCCGAAGATTCGGGTGTGGAGGAGATTCGTTTTAGGGAAGACGGACGGGATGTGCGCTCTGTGGTGACGGAGCACAAGTGGCAAGAGGGTGATTTGGTTGTTATGGAAGTGAAGGATTCGGAAGCTAAGGATGTGCGTGCTGGTCATAATCAGCACTCAACTTCATCTGTGGTTTCTGAGTTGACTAACGGCGATTTGAATATTGTTAATGCTGTGAGGATGTTGGACACTCTGTCTTTAACTCCCGAGCGCGATCTTTCAGATGTTCATGCCTACAGGAAGTTGCTTGAGGCTGTTGACAAGCGCTCGGATACGATTAAGAGGCTGTCGGCTGAAATTAAGCTTAATGAGAAGCGTAGGTCCACCTTTAAATTGTTGCGCCCAAAGAAGGAACTAGTAGAGGAAGTGCCATTGGAACCTTTTATTCCTCTTACTAAAGAGGAAGAAGTTGAGGTTGCACGTGCCTTTTCTGCAAACAGGAGGAAGATCTTGGTTGCCCATGAGAAATCTTGCATTGAGGTCTCAGGAGAAAAATTTCAGTGCCTTCGACCTGGTGCATGGTTAAATGATGAGGTAATAAATTTGTACCTTGAATTGCTGAAAGAGAGGGAGAGACGAGCGCCGCAGAAGTTTCTGAACTGTCATTTTTTCAATACCTTTTTCTACAAGAAGTTAATAAGTGGCAAGAGCGGTTATGATTTCAAATCTGTGAGGAGATGGACCAGCCAAAAGAAACTGGGATATGGCCTACATGAATGTGATAAAATTTTTGTACCTATCCATAAAGAGATCCATTGGTGCTTGGCTGTTATCAATAAGAAAGATAAGAAATTTCAGTACTTCGATTCACTGAAAGGAATAGATACCCGTGTGATGGAAGTTCTGGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATGTAAGTTCTTGGGAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAATGGGTATGACTGTGGGGTTTTTATGATCAAATACGCTGACTTCTGTAGCAGAAACTTGGGACTGTGTTTCAACCAGGAACACATGTCGTACTTTCGGCGGAGAACAGCTAAAGAAATCTTGAGATTAAGAGCTAACTAA 1557 0.4406 MAVVTNNGKRRQHWLSGNHHLPSPNSKRPRLSTTSENHAHSVLSSSSIVSRISKYPEAKPLMRREVHAPCSSRKFAFPTSNRMKSSLNASSSYCDRKEDIGNDVGNMLSENYERAKNSALASIRFGEKGKEVNEADDDSPKGMVSEDSGVEEIRFREDGRDVRSVVTEHKWQEGDLVVMEVKDSEAKDVRAGHNQHSTSSVVSELTNGDLNIVNAVRMLDTLSLTPERDLSDVHAYRKLLEAVDKRSDTIKRLSAEIKLNEKRRSTFKLLRPKKELVEEVPLEPFIPLTKEEEVEVARAFSANRRKILVAHEKSCIEVSGEKFQCLRPGAWLNDEVINLYLELLKERERRAPQKFLNCHFFNTFFYKKLISGKSGYDFKSVRRWTSQKKLGYGLHECDKIFVPIHKEIHWCLAVINKKDKKFQYFDSLKGIDTRVMEVLASYIVDEVKDKTGKDIDVSSWEKEFVEDLPEQQNGYDCGVFMIKYADFCSRNLGLCFNQEHMSYFRRRTAKEILRLRAN* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1102 518 Pfam Ulp1 protease family, C-terminal catalytic domain 331 512 IPR003653 GO:0006508|GO:0008234
Pvu3g1102 518 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 1 517 - -
Pvu3g1102 518 Coils Coil 516 518 - -
Pvu3g1102 518 MobiDBLite consensus disorder prediction 18 45 - -
Pvu3g1102 518 Gene3D Adenoviral Proteinase; Chain A 285 516 - -
Pvu3g1102 518 ProSiteProfiles Ubiquitin-like protease family profile. 316 488 IPR003653 GO:0006508|GO:0008234
Pvu3g1102 518 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 1 517 - -
Pvu3g1102 518 SUPERFAMILY Cysteine proteinases 284 517 IPR038765 -
Pvu3g1102 518 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1102 Pvu-Chr3 26279558 26285673 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1102 K08592 - gmx:100797013 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1102 3 26279558 26285673 Pvu3g1102 3 26279558 26285673 ECH
Pvu3g1102 3 26279558 26285673 Pvu9g2569 9 36145675 36151989 PCT