LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu3g0714	ATGAGCATCTACACCACCCTTTCCTTCGACCCTCTCTTTAGCTTCAATCACTGCGTCAACAGAGAAAGAGAACCCTCCATTCACAGTTCCAGGCCAAAGCTGTTCTCTCTCACTTCTTCCTCCACCCTCACCCTCTTCAACTCCAACAACAACTGTACCTATAACTATGCCTCTTGCAAACCCCACAGGTTCCACACTCCAAAGTTTGAGTCTTTTGCCACAAACACTGATACCCTTGAGTCTCTTCAGTCTTCTGATGTCTTGTTCGACCGGAGTTTCCCCATCAACCGAACTGAACTGGTGGAGGGAAAGATCTTTGTAAGATTGGATCATGGCAAAGATTTGGGAAATTGGGAGCTTACAGTGGCTTGCAATCTAACAGGGAAATGGATTCTTCATTGGGGAGTTTCCCGTGTGGATGATGTTGGAAGTGAATGGGATCAACCTCCTCGGGATATGATACCACCTGGATCTATTCCTATTAAGGACTATGCAATAGAAACACCTATGCAGAAATCATTGTCGTCTGCTGAAGGAGATGCTTTACATGAAGTCAAGATCGATCTTAAACCCAACAATGATATTTCAGCAATTAATTTTGTTCTCAAGGATGAGGAAACTGGTGCATGGTATCAATACAAAGGAAGAGATTTCAAGGTTCCTCTGGTTAATTACCTTAAGGAGGATGCTAATATAATTGGACCTAAAAAGGGTTTTAGTTTGTGGCCAGGGGCCTTGGGGCAGATATCTAACATTCTGCTCAAGTCAGATGCAACACATGACAAAGTTCAAGATGGCAACACTGGATCCAGAAATACAAAAGTGGAAAATAGTCAACTAGAAGGTTTCTATGTAGAGCTGCCTATTACCAAGGAAATTAGTGTCAATAACTCTATCAGTGTCTCCATTAGGAAGTGTTCTGAAACAGCTAAGAATAATTTATATTTAGAAACAGATATACCTGGAGATATTCTCCTTCATTGGGGGGTTTGTAGGGATGATTTGAGGTGGTGGGAAATTCCACCTACTCCTCATCCACCAGAAACAATAGCATTTAAGGACAGAGCTTTGAGAACTAAATTACAGTCAAGAGACAATGGAGTGGGAAGTTCAGTACAACTCTCTTTGGGAGAAGAACTTTCTGGATTTCTTTTTGTTTTGAAGCTAAATGATGGTGCTTGGATAAATGATATGGGAGATGACTTTTATATCCCTCTCCCAAGATCTAGTAGCTTAATTATTGACAACAGGGAGAACCAATTTGAAGGTGTACAGAGGGAAGTAACTGAAGTCACTGAAGAGGCAGGTGAAGAGGAATCGATATCTGCATTTACCGATGAAATAATCAGTGAAATAAGGCATTTGGTGACAGATATTTCCTCTGAGAAGAATCGAAAGACAAAATCCAAAGAAGCACAAGAAACCATTCTTCAAGAAATTGAAAAGCTAGCTGCTGAGGCCTACAGTATCTTTAGAAATTCAGTTCCAACTTTCTCAGAGGAAACTATTACGGAATCTGAGACTGCTGTTGAATCCAAGACAGTAATATTTCCTGAATTGCCACCACAAGTATCCTCCGGAACAGGCACTGGGTATGAAATACTATGCCAAGGGTTTAATTGGGAATCTCATAAATCTGGAAGATGGTACATGGAGCTTAAAGAGAAAGCTGCAGAACTGGCATCATTTGGCGTTACTGTGATATGGTTACCACCACCGACAGAGTCTGTTTCTCCTGAAGGATATATGCCAAAGGATTTATATAATTTAAATTCGAGATATGGAACTGTTGATCAACTGAAGGATGTGGTGAAAAGTTTTCATGAAGTTGGAATCAAAGTGCTTGGAGATGTTGTTTTAAATCACCGCTGTGCTCACTATAAGAATCAGAATGGTATTTGGAACTTATTTGGAGGTCGTCTCGACTGGGATGATCGTGCAATTGTAGCAGATGATCCACATTTTCAGGGGAGGGGCAATAAGAGTAGCGGAGACAATTTTCATGCTGCTCCAAACATTGATCACTCGCAGGAATTTGTGAGAAAGGATCTCAAAGAATGGTTATTGTGGTTGAGGGAAGAAATTGGGTATGATGGGTGGCGCCTCGACTTTGTCAGAGGATTTTGGGGTGGTTATGTAAAGGACTACCTGGAAGCAACTGAACCATACTTTGCTGTTGGAGAGTATTGGGATTCTCTTAGTTATACATATGGTGAAATGGATCATAATCAAGATGCCCATAGGCAGAGGATCGTGGACTGGATCAATGCTACTGGTGGTACTGCTGGTGCATTTGATGTTACAACCAAAGGGATTCTTCACTCCGCTTTGGAAAGATGTGAATACTGGCGCCTGTCAGATCAGAAAGGAAAGCCCCCTGGTGTTCTTGGGTGGTGGCCATCTCGTGCTGTTACTTTTATAGAAAATCATGATACTGGTTCTACCCAGGGTCATTGGAGATTTCCCAGTGGAAAAGAAATGCAAGGATATGCTTACACTCTTACTCACCCAGGAACTCCATCAGTGTTCTTTGACCATCTTTTTTCTCACTATAAAACTGAAATATCGACACTTCTCTCTATCAGGAAGCGGAACAAGATCCAATGCAGGAGTACAGTTAAAATTTGCAAGGCAGAAAGGGATGTTTATGCAGCTGTGATAGATGAAAAAGTTGCTATGAAGATTGGACCTGGTCAATTTGAACCACCCAGTGGATCCCAAAAATGGTCCTCAGTTTTGGAGGGAAGAGACTATAAGATTTGGGAGGCATCGTAA	2775	0.4162	MSIYTTLSFDPLFSFNHCVNREREPSIHSSRPKLFSLTSSSTLTLFNSNNNCTYNYASCKPHRFHTPKFESFATNTDTLESLQSSDVLFDRSFPINRTELVEGKIFVRLDHGKDLGNWELTVACNLTGKWILHWGVSRVDDVGSEWDQPPRDMIPPGSIPIKDYAIETPMQKSLSSAEGDALHEVKIDLKPNNDISAINFVLKDEETGAWYQYKGRDFKVPLVNYLKEDANIIGPKKGFSLWPGALGQISNILLKSDATHDKVQDGNTGSRNTKVENSQLEGFYVELPITKEISVNNSISVSIRKCSETAKNNLYLETDIPGDILLHWGVCRDDLRWWEIPPTPHPPETIAFKDRALRTKLQSRDNGVGSSVQLSLGEELSGFLFVLKLNDGAWINDMGDDFYIPLPRSSSLIIDNRENQFEGVQREVTEVTEEAGEEESISAFTDEIISEIRHLVTDISSEKNRKTKSKEAQETILQEIEKLAAEAYSIFRNSVPTFSEETITESETAVESKTVIFPELPPQVSSGTGTGYEILCQGFNWESHKSGRWYMELKEKAAELASFGVTVIWLPPPTESVSPEGYMPKDLYNLNSRYGTVDQLKDVVKSFHEVGIKVLGDVVLNHRCAHYKNQNGIWNLFGGRLDWDDRAIVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRKDLKEWLLWLREEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIVDWINATGGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMQGYAYTLTHPGTPSVFFDHLFSHYKTEISTLLSIRKRNKIQCRSTVKICKAERDVYAAVIDEKVAMKIGPGQFEPPSGSQKWSSVLEGRDYKIWEAS*	925

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu3g0714	924	Gene3D	-	867	923	IPR013780	-
	Pvu3g0714	924	SUPERFAMILY	(Trans)glycosidases	531	850	IPR017853	-
	Pvu3g0714	924	Coils	Coil	414	434	-	-
	Pvu3g0714	924	PRINTS	Alpha-amylase signature	611	622	IPR006046	GO:0004556\|GO:0005975\|GO:0043169
	Pvu3g0714	924	PRINTS	Alpha-amylase signature	697	708	IPR006046	GO:0004556\|GO:0005975\|GO:0043169
	Pvu3g0714	924	PRINTS	Alpha-amylase signature	801	813	IPR006046	GO:0004556\|GO:0005975\|GO:0043169
	Pvu3g0714	924	SMART	aamy	533	862	IPR006047	GO:0005975
	Pvu3g0714	924	PANTHER	ALPHA-AMYLASE	91	924	-	-
	Pvu3g0714	924	Gene3D	Glycosidases	533	866	-	-
	Pvu3g0714	924	Pfam	Alpha amylase, catalytic domain	560	812	IPR006047	GO:0005975
	Pvu3g0714	924	CDD	AmyAc_arch_bac_plant_AmyA	534	873	-	-
	Pvu3g0714	924	Pfam	Alpha-amylase C-terminal beta-sheet domain	864	922	IPR012850	GO:0004556\|GO:0005509\|GO:0005975
	Pvu3g0714	924	PANTHER	ALPHA-AMYLASE 3, CHLOROPLASTIC	91	924	-	-
	Pvu3g0714	924	SMART	alpha-amyl_c2	863	923	IPR012850	GO:0004556\|GO:0005509\|GO:0005975
	Pvu3g0714	924	SUPERFAMILY	Glycosyl hydrolase domain	867	922	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu3g0714	Pvu-Chr3	10231216	10244012	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu3g0714	73	924	Glycoside Hydrolase	AT1G69830	66.979	0.0	1197

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu3g0714	K01176		-	gmx:100788193	1681.38

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu3g0714	3	10231216	10244012	Pvu3g0714	3	10231216	10244012	ECH
	Pvu3g0714	3	10231216	10244012	Pvu2g0681	2	7612419	7619229	PCT