Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0577 ATGATCAAACCCCAACCTCACCAACTAATCATCCTTGCTTTCTTACTTTCCTTCTCTCACACAAACGTCGTCGTTTCAGCTCGACTTTTCCCCAACGTCTCCTCCTTCCTCCCCGCCCACGCCCCTCTCGGAGGCGCGTGGGATGCCTTTCGTAACCTCACCGGCTGCCATCGCGGCGAGAACTATGACGGCCTCGCCAACCTCAAATCCTACTTCGAACGCTTCGGCTACTTCCCTCACGCGCCGCCATCCAACTTCTCCGACGAGTTCGACGACGCGCTCGAATCCGCGATCAAAACTTACCAGAAGAACTTCAACCTCAACGTCACCGGCGTTCTCGACGATGCCACGCTTCAGCAGATCGTCCTGCCGCGGTGCGGCGTCGCCGACATAATCAACGGCACCACGACGATGAACGCCGGGAAGCAGAACGAAACGGCGTCGTTCAGCAAGCCGCGGTTCCACACGGTGGCGCACTTCGCTCTGTTCCCCGGCAATCCGCGGTGGCCGGAGGGGACGGAGGAGCTCACGTACGCGTTCAACCCCGGCAACGACCTTAGCAACACCGTGAAAGGCGTTTTCGCATCCGCCTTCGCTCGGTGGGCGGAGGTGACGTCGTTAACGTTCCGTGAGACGGCGTCGTACTTCAACGCCGACATCAGGATCGGTTTCTTCAGCGGTGACCACGGCGACGGGGAGCCGTTCGACGGCAGTTTGGGGACGCTGGCACACGCGTTCTCGCCGACGAATGGGAGGTTCCACTTGGATGCCGACGAGGACTGGGTGGTTTCCGGCGACGTGACGCAGTCGGCGCTGTCATCGGCAGTGGATTTGGAATCAGTGGCAGTGCACGAGATTGGGCACTTACTAGGGTTAGGTCACTCGTCTGTGGAAGAAGCAGTTATGTTTCCGACGATTTCGTCGCGGAGGAAGAAGGTGGTGCTAGCGCAAGATGATATTGAAGGGATTCAGTTTCTGTACGGTTCCAATCCCAATTTTAATGGTTCCACTGTTACATCCGCACCGGAGAGAGACACCAGCGACGGTGGCCGCTGCCTCACTTGTGTGGGCTCCTCCTGGAGCGTGTTCACTTTGTTGACTTTTTCAACTTTATATTTTACATTATTATAA 1131 0.5712 MIKPQPHQLIILAFLLSFSHTNVVVSARLFPNVSSFLPAHAPLGGAWDAFRNLTGCHRGENYDGLANLKSYFERFGYFPHAPPSNFSDEFDDALESAIKTYQKNFNLNVTGVLDDATLQQIVLPRCGVADIINGTTTMNAGKQNETASFSKPRFHTVAHFALFPGNPRWPEGTEELTYAFNPGNDLSNTVKGVFASAFARWAEVTSLTFRETASYFNADIRIGFFSGDHGDGEPFDGSLGTLAHAFSPTNGRFHLDADEDWVVSGDVTQSALSSAVDLESVAVHEIGHLLGLGHSSVEEAVMFPTISSRRKKVVLAQDDIEGIQFLYGSNPNFNGSTVTSAPERDTSDGGRCLTCVGSSWSVFTLLTFSTLYFTLL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0577 376 Gene3D Collagenase (Catalytic Domain) 53 334 IPR024079 GO:0008237
Pvu3g0577 376 Pfam Matrixin 173 328 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Pvu3g0577 376 PRINTS Matrixin signature 121 134 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pvu3g0577 376 PRINTS Matrixin signature 194 209 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pvu3g0577 376 PRINTS Matrixin signature 218 246 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pvu3g0577 376 PRINTS Matrixin signature 281 306 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pvu3g0577 376 PRINTS Matrixin signature 315 328 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pvu3g0577 376 PANTHER MATRIX METALLOPROTEINASE 10 367 - -
Pvu3g0577 376 Pfam Putative peptidoglycan binding domain 65 120 IPR002477 -
Pvu3g0577 376 PANTHER MATRIX METALLOPROTEINASE 10 367 - -
Pvu3g0577 376 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 162 332 - -
Pvu3g0577 376 SUPERFAMILY PGBD-like 68 131 IPR036365 -
Pvu3g0577 376 SMART col_5 165 329 IPR006026 GO:0006508|GO:0008237|GO:0008270
Pvu3g0577 376 CDD ZnMc_MMP 175 328 IPR033739 GO:0008237|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0577 Pvu-Chr3 7115837 7117359 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0577 - - gmx:100782143 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0577 3 7115837 7117359 Pvu3g0577 3 7115837 7117359 ECH
Pvu2g0793 2 11373048 11374448 Pvu3g0577 3 7115837 7117359 PCT