Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3016 ATGGGTTTGAAGGCCATGGACAAAACTCAATTGTTGTCCAAGATGGCTATGGGGGATGGACATGGTGAATCATCCCCATACTTTGATGGATGGAAGGCTTATGATGAAAATCCCTTTCACCCCACAGATAATCCTAACGGGGTCATCCAAATGGGTCTTGCTGAGAATCAGCTTACTTCTGATTTGGTTGAAGATTGGATACTGAACAACCCAGAGGCCTCCATTTGCACCCCAGAAGGAATAATTGATTTCAGGGCCATAGCTAACTTTCAGGATTATCATGGTCTAGCCGAGTTCAGAAATGCTGTGGCTAAATTCATGGGTAGAACAAGAGGAAACAGAATCAAGTTTGACCCTGACCGTATTGTCATGAGTGGTGGAGCCACCGGAGCACACGAAGTCACTGCCTTTTGTTTGGCAGATCCCGGTGAAGCATTTCTAGTGCCCATTCCCTATTATCCAGGTTTTGACCGGGATTTGAGGTGGAGAACGGGAGTTCAACTTGTTCCAGTTATGTGCGATAGCTCAAATAATTTCATGTTGACAAAGGAAGCATTGGAAGATGCCTATGAGAAAGCTAGGGAGAATAACATCAGAGTAAAGGGTTTACTCATCACCAATCCATCAAATCCATTAGGCACGATCATGGACAGAAAAACACTGAGAACAGTGGTGAGCTTCATTAATGAGAAGCGTATCCACCTTGTATGTGATGAAATATATGCTGCAACAGTTTTCAGCCACCCCGGTTTCATAAGCATAGCTGAGATATTAGAGGAAGAAACAGACATAGAGTGTGACCGCAACCTCGTTCACATTGTTTATAGTCTTTCAAAGGACATGGGGTTCCCTGGCTTCAGAGTTGGCATCATATACTCTTACAATGATGCTGTGGTTAACTGTGCACGCAAAATGTCAAGCTTTGGATTGGTGTCAACACAGACTCAGTATCTTTTAGCATCAATGCTAAATGATGATGAGTTTGTGGAGAGGTTTCTGGCAGAGAGTGCAAAGAGGTTGTCACAAAGGTTCATGGTTTTCACTGGGGGGTTGGCCAAAGTTGGCATAAAGTGCTTGCAAAGCAATGCTGGTCTCTTTGTGTGGATGGATTTAAGGCACCTTCTCAAAACGCCAACTCTTGACTCTGAAATGGAGCTTTGGAAAGTGATTATTCATGAAGTTAAGATCAATGTTTCACCTGGCTCTTCTTTCCATTGCACTGAGCCAGGGTGGTTTAGGGTGTGCTATGCCAACATGGATGATATGGCTGTGCAAATTGCTTTGCAAAGAATCCGCACCTTTGTGCTTCAAAACAAGGAGGTGGTGGTGTCTAAAAAGAAACTTTGTTGGCACAGTAACTTGAGGCTGAGCCTCAAGACCAGAAGGTTTGATGATATCATGATGTCACCTCACTCTCCCTTACCTCAGTCACCCATGGTTAAAGCCACAAATTGA 1455 0.4392 MGLKAMDKTQLLSKMAMGDGHGESSPYFDGWKAYDENPFHPTDNPNGVIQMGLAENQLTSDLVEDWILNNPEASICTPEGIIDFRAIANFQDYHGLAEFRNAVAKFMGRTRGNRIKFDPDRIVMSGGATGAHEVTAFCLADPGEAFLVPIPYYPGFDRDLRWRTGVQLVPVMCDSSNNFMLTKEALEDAYEKARENNIRVKGLLITNPSNPLGTIMDRKTLRTVVSFINEKRIHLVCDEIYAATVFSHPGFISIAEILEEETDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLVSTQTQYLLASMLNDDEFVERFLAESAKRLSQRFMVFTGGLAKVGIKCLQSNAGLFVWMDLRHLLKTPTLDSEMELWKVIIHEVKINVSPGSSFHCTEPGWFRVCYANMDDMAVQIALQRIRTFVLQNKEVVVSKKKLCWHSNLRLSLKTRRFDDIMMSPHSPLPQSPMVKATN* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3016 484 CDD AAT_like 89 432 - -
Pvu2g3016 484 Pfam Aminotransferase class I and II 49 431 IPR004839 GO:0009058|GO:0030170
Pvu2g3016 484 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 5 446 - -
Pvu2g3016 484 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 5 446 - -
Pvu2g3016 484 Coils Coil 176 203 - -
Pvu2g3016 484 SUPERFAMILY PLP-dependent transferases 22 435 IPR015424 -
Pvu2g3016 484 Gene3D Aspartate Aminotransferase, domain 1 37 430 IPR015422 GO:0003824
Pvu2g3016 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Pvu2g3016 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Pvu2g3016 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Pvu2g3016 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Pvu2g3016 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Pvu2g3016 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Pvu2g3016 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 294 - -
Pvu2g3016 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 302 325 - -
Pvu2g3016 484 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 276 289 IPR004838 GO:0003824|GO:0009058|GO:0030170
Pvu2g3016 484 Gene3D - 71 325 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3016 Pvu-Chr2 45641803 45644641 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3016 K20772 - gmx:100037458 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1645 2 30179231 30181098 Pvu2g3016 2 45641803 45644641 PCT