Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2979 ATGGGAAACCGACGCTTCACTCGGGTCGCAATCAGCGACGAGGAGGACGAAGCGCCTCCGCCTCCGAAGCAGCAAGCCACGGCCAGTGTTTCCGACGAGAACCGGTCGAAGCAGCAACGCAAGAGGAAGAGGATGAAGCTCCAGGAAGAAGAGGAGGAAGAGGAGGAAGTGGAGAAAGAGAGCGAGAAGGAGAAAGAGGAAGACAAGAAGAAGAAGAGAAAGATCAGAGACAAGCAGGACGGAAGATCTAACGAAGAAGAGGAACCGCCGCAGGAAGACGCCAAGCCCATGGGCGAACCGGTTAGGGTTTCCGGAAAGGGGAGAGGCCGGAAAAAGCATTTCGATTCCTTCGAGTACGACGGAAACCAATACACGCTGGAAGATCCTATACTTCTCACACCCGAGGACAAAGACCAAAAACCGTATGTGGCGATTATTAAGGACATTACGCAATCCCTAAATGGCAGCATGATGGTCACAGGCCAGTGGTTCTATCGACCTGAAGAGGCTGAAAGAAAAGGTGGTGGCAGCTGGCAATCACGTGATACAAGGGAGCTGTTTTATAGTTTCCACCGTGATGATGTACCTGCAGAATCTGTTATGCATAAGTGTGTGGTGCATTTTGTTCCCATACACAAACAGCTTCCAAATCGCAAGCAGCATCCTGGGTTTATTGTGCAAAAGGTTTATGACACAGTAGAAAGGAAACTCTGGAAGCTAACTGATAAGGACTATGAGGACAATAAACAGCAAGAAATTGATGAGCTTGTTCAGAAAACCCTTCAACGTTTGGGGGAACTACTTGATATTGAGCCTGAAGAACCTGTTGCTGAACAGGAAGATCTGATGAAAAATAAAAGAATCTTAAGGAAAAAGAGCATTTCACCACTCGATGTTTCCAAAGAGGACGAAACATCTCGTAAGAGTGACCAATCTCTGAAACCTGAAACACCGGGGAGTTGTGCAAATAATGCTTCAGAACATTATCGTATATTAGTGGATTTTAATGCTCTAACTGGAGATACCCACCGTGACAAATGTTTGGAGAAGTTGCTTCAAAGTGTTCAATTCATGTTTAACTCTGATGACAGCATAAAGAAGGAAGACAAAGTAAATGACAATTCTGATGCAAACAACAATGGAAACAATGACAAAAGTTCAGAAGTAGCAAATGAATGTAAAGACCAGGCTCAACAGAGTTCCAAGTCTTTTGTCTGGCCAGATGTTGCTGTTCCAGCTGTAGTTGCTCTAGAAAAAGCATCACATGATACCTTTTCATCAGATTATCAGAAGTATAATCAAAAGCTACGGCAATTAGTGTTTAATCTCAAGAACAATGCAATCCTAGCACGCCGTCTATTAAATGGAGAGTTGGAACCTTCTAAAATATTGAATATGACTCCCAATGAATTGAAGGAGGGTTTGACTGCTGAGGAAACAAACAAGAAAGAGCCCGATGAGTCACAACAAATGCAGATGACGGGTGCTCGATGCCGAAGATGCAGTGAGTGTAAGGTGGGCTTGAGGGATATAATCCACGCAGGACATGGTGATCGATATCAGCTGGAATGTATTGCCTGTGGTCATTCCTGGTTTGCCTCCCGAGATGAAGTGTCTGACCTGACTATAGATGCATCAGATTCAAAAAGAAGTGTAGGTACAGCGCCATGGGCCACTGCTAAATTTGAAGATGTTGAGAAGAAGCTGGTTAGTCCCCGTGAATCTGAAAAGAATGACATATTTAAGAAAACAAGTGAAGCATATATGCCAGTTTTTGATGCCCAGAAATCGTTTGGCAAGTCTAGGAAAGATGAAAACGTCCAAGCTTCAAAACAGGTTGACTAG 1845 0.4428 MGNRRFTRVAISDEEDEAPPPPKQQATASVSDENRSKQQRKRKRMKLQEEEEEEEEVEKESEKEKEEDKKKKRKIRDKQDGRSNEEEEPPQEDAKPMGEPVRVSGKGRGRKKHFDSFEYDGNQYTLEDPILLTPEDKDQKPYVAIIKDITQSLNGSMMVTGQWFYRPEEAERKGGGSWQSRDTRELFYSFHRDDVPAESVMHKCVVHFVPIHKQLPNRKQHPGFIVQKVYDTVERKLWKLTDKDYEDNKQQEIDELVQKTLQRLGELLDIEPEEPVAEQEDLMKNKRILRKKSISPLDVSKEDETSRKSDQSLKPETPGSCANNASEHYRILVDFNALTGDTHRDKCLEKLLQSVQFMFNSDDSIKKEDKVNDNSDANNNGNNDKSSEVANECKDQAQQSSKSFVWPDVAVPAVVALEKASHDTFSSDYQKYNQKLRQLVFNLKNNAILARRLLNGELEPSKILNMTPNELKEGLTAEETNKKEPDESQQMQMTGARCRRCSECKVGLRDIIHAGHGDRYQLECIACGHSWFASRDEVSDLTIDASDSKRSVGTAPWATAKFEDVEKKLVSPRESEKNDIFKKTSEAYMPVFDAQKSFGKSRKDENVQASKQVD* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2979 614 Coils Coil 33 78 - -
Pvu2g2979 614 MobiDBLite consensus disorder prediction 297 323 - -
Pvu2g2979 614 SMART mid_6 376 481 IPR003618 GO:0006351
Pvu2g2979 614 Pfam BAH domain 123 239 IPR001025 GO:0003682
Pvu2g2979 614 Gene3D - 323 473 IPR036575 GO:0006351
Pvu2g2979 614 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 611 - -
Pvu2g2979 614 SMART BAH_4 122 241 IPR001025 GO:0003682
Pvu2g2979 614 MobiDBLite consensus disorder prediction 1 115 - -
Pvu2g2979 614 MobiDBLite consensus disorder prediction 34 50 - -
Pvu2g2979 614 CDD BAH_plant_3 104 250 - -
Pvu2g2979 614 ProSiteProfiles TFIIS central domain profile. 343 499 IPR003618 GO:0006351
Pvu2g2979 614 SUPERFAMILY Elongation factor TFIIS domain 2 338 472 IPR036575 GO:0006351
Pvu2g2979 614 MobiDBLite consensus disorder prediction 62 95 - -
Pvu2g2979 614 Pfam Transcription factor S-II (TFIIS), central domain 339 490 IPR003618 GO:0006351
Pvu2g2979 614 MobiDBLite consensus disorder prediction 297 311 - -
Pvu2g2979 614 ProSiteProfiles BAH domain profile. 122 241 IPR001025 GO:0003682
Pvu2g2979 614 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 611 - -
Pvu2g2979 614 MobiDBLite consensus disorder prediction 375 396 - -
Pvu2g2979 614 MobiDBLite consensus disorder prediction 366 396 - -
Pvu2g2979 614 Gene3D - 87 258 IPR043151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2979 Pvu-Chr2 45265593 45272640 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2979 - - gmx:100787670 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2979 2 45265593 45272640 Pvu2g2979 2 45265593 45272640 ECH
Pvu2g1625 2 29970865 29976998 Pvu2g2979 2 45265593 45272640 PCT