LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu2g1625	ATGGTGAATCGTCCTCGCCTGACTCGGGTGGCGACCAGCGATGACGAAGACGAAGCGCTGCGCCCACAACGCACGCGGAAGAGGATGAGGCTTCTGGAGGAAGACAACGATGACGACAATGAAGAAGAAGGAAAAGAAGAGGTACCGGAACCGCCTCAACCTGCGGAGGACGCTAAGCCTATTGGCGACGCTGTTAGGGTTTCGGGCAAAGGAAGAGGCAGGAAAAGGCACTATGACTCCTTCGAGTTCGATGGCATCCAATATACTCTCGAGGATCCTGTTCTTCTCGTACCCGAGGAGAAAGGCCAAAAGCCATATGTAGCAATTATTAAGGACATTACACAGTCTATCAATGGCAACGTGAAAGTAACTGGACAATGGTTTTATCGCCCAGAAGAAGCTGAGAAAAAAGGAGGTGGAAACTGGCAATCGTGTGATACGAGGGAGCTGTTTTATAGTTTTCATCGTGATGATGTTCCAGCGGAGGCTGTAATGCATAAGTGTGTGGTGCATTTTGTTCCTAGACACAAACAGCTTCCAAAACGTAAGGATCACCCTGGGTTTATTGTACAGAAGGTGTATGACACTGTGGAAAGAAAACTCTGGAGGCTGAGTGATAAGGACTATGAGGATATTAAGCAGCAAGAAATTGATGTTCTTGTTCAAAAGACTCTGGAACGTATTGGTGAACTTCTTGACATTGAGCCTAAGGAAGCCCCTGATGATGACGAGGACCAGATGAAACATAGAAGAAGCTTAAGCTTAAGGAGAAAGAGTGTTTCACCTTCCAATGTTTCAAAGGAAGAGGAGGAAACACTCAGGAGCGAACAACATCCAAAGTCAGAAACACCAGTGACTTATGTAACTAATGCCTCAGAGTATTATGGCATATTGGTAAAATTCAACGCGCTAACTGGAGATAGCCATCGTGACAAATGGTTGGAGAGGTTGCTTCAACGCATTCAGTACATGTGTGATTCTAATGATAGCAAAGAAAGGGACAAAGGATTGGGAAATGTCAATTCTGATGAAATCAACGGTGGAAGCAAGCATATAAGTTCAGAATCAGTAAATGACTGTCAAGATAAGGTTCAGAAGAGTTCCAAGTCTTTTATCTGGCCAGATGCTGCTGTATCAGCCATAGTTTCTCTCGAAAAAGCTTCACACGAGGCTCTCTCATCAGATTCTACGAAGTACAACCAAAAGTTGCGGCAATTGGTTTTTAATCTCCAGAAAAATGCAGTGTTAGCATGCCGTCTGTTAAGCGGAGAATTGGAACCTTCAAAACTATTAAATATGACACCCAATGAATTAAAGGAGGGTTTGGTTGCTGACAAAAGAACCGAGAAGCCTCACGAAACCCAACATTTGCAAATGACAGATGGCCGCTGCTCAAAATGCATGGAATTTAAGGTGGGTTTGAGAGAGATTATCCATGCTGGAAATAATGAACGATATCAGTTGGAATGCGTTTCCTGCGGTCATTCCTGGTATGCCTCACGAGATGAGGTGTCTATGCCTATCATAGATTCATCTGATTCAAAAAGAAACATAGGCACAGCGCCGTAG	1569	0.443	MVNRPRLTRVATSDDEDEALRPQRTRKRMRLLEEDNDDDNEEEGKEEVPEPPQPAEDAKPIGDAVRVSGKGRGRKRHYDSFEFDGIQYTLEDPVLLVPEEKGQKPYVAIIKDITQSINGNVKVTGQWFYRPEEAEKKGGGNWQSCDTRELFYSFHRDDVPAEAVMHKCVVHFVPRHKQLPKRKDHPGFIVQKVYDTVERKLWRLSDKDYEDIKQQEIDVLVQKTLERIGELLDIEPKEAPDDDEDQMKHRRSLSLRRKSVSPSNVSKEEEETLRSEQHPKSETPVTYVTNASEYYGILVKFNALTGDSHRDKWLERLLQRIQYMCDSNDSKERDKGLGNVNSDEINGGSKHISSESVNDCQDKVQKSSKSFIWPDAAVSAIVSLEKASHEALSSDSTKYNQKLRQLVFNLQKNAVLACRLLSGELEPSKLLNMTPNELKEGLVADKRTEKPHETQHLQMTDGRCSKCMEFKVGLREIIHAGNNERYQLECVSCGHSWYASRDEVSMPIIDSSDSKRNIGTAP*	523

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu2g1625	522	ProSiteProfiles	TFIIS central domain profile.	309	466	IPR003618	GO:0006351
	Pvu2g1625	522	SUPERFAMILY	Elongation factor TFIIS domain 2	304	439	IPR036575	GO:0006351
	Pvu2g1625	522	Gene3D	-	70	295	IPR043151	-
	Pvu2g1625	522	SMART	mid_6	343	448	IPR003618	GO:0006351
	Pvu2g1625	522	MobiDBLite	consensus disorder prediction	1	74	-	-
	Pvu2g1625	522	Pfam	BAH domain	87	201	IPR001025	GO:0003682
	Pvu2g1625	522	MobiDBLite	consensus disorder prediction	262	278	-	-
	Pvu2g1625	522	Gene3D	-	339	440	IPR036575	GO:0006351
	Pvu2g1625	522	MobiDBLite	consensus disorder prediction	236	283	-	-
	Pvu2g1625	522	MobiDBLite	consensus disorder prediction	236	251	-	-
	Pvu2g1625	522	ProSiteProfiles	BAH domain profile.	86	205	IPR001025	GO:0003682
	Pvu2g1625	522	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	1	522	-	-
	Pvu2g1625	522	CDD	BAH_plant_3	68	214	-	-
	Pvu2g1625	522	MobiDBLite	consensus disorder prediction	9	34	-	-
	Pvu2g1625	522	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	1	522	-	-
	Pvu2g1625	522	SMART	BAH_4	86	205	IPR001025	GO:0003682
	Pvu2g1625	522	MobiDBLite	consensus disorder prediction	330	357	-	-
	Pvu2g1625	522	Pfam	Transcription factor S-II (TFIIS), central domain	305	450	IPR003618	GO:0006351
	Pvu2g1625	522	MobiDBLite	consensus disorder prediction	342	357	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu2g1625	Pvu-Chr2	29970865	29976998	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu2g1625	-		-	vun:114173943	905.975

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu2g1625	2	29970865	29976998	Pvu2g2979	2	45265593	45272640	PCT