Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2894 ATGGAACACCATGAAAACGGCGTCGTCAATGGCAGGCAAGAACACGAAGAAGCATTGCTGGCTCTCGTCGAACACCGTACCCGTGAAGTCAAACACCTCCGTTATTATATCTCTTATTACACTTCCCAGCTTGAGGAAGCAGAAAAGAGGTTGTTGGAGTCTAAATCCAAGTTGGCTCTTTTACGAGGTGTAACTAGTGCAAGTTCATCACACGTTGACGCTGAACAAGTGAAGGTAGAACGTGAATCAAAAATTGGTTCCTTTCATAAAAGTGACGGTTCTTGTTCTTCCAAAAACCACCTTCAGTCTGGGTTACGCCTTGCTCATGTGGGTTCAAAATGTTCGCACTCCGTACCGTTGCCACCTTCTTCTCTTGCTAGGGTAAAGGTAAAGTCTGAAAAGAATCAGACTCAGAGTATATCTACTGAACGGGAAAGCATTGAAGTCCAAGGCAGAGGGAGCAAAAGGAAGGTTTTTGAACAGAAAGAGGCTGAGGAAGTGATTCGCTTGATATGTAAGAATTCTAAACCAGAATCAGTGCTTTTTCAAACAAGCTATTATCCCTGCTCAAGTCAACACAAGAGGAGATTGCGATGTATTGCTGTGTCTCCTGTAAATGATCGCCAGTTTGTGACCAGTGCTTTGGATGGAGTGGTCAACGTGTGGGAAGTTTTTCAATCAAAATCAAATCCACATCTTATTACAAGCACAAATTGTATATCCCCACAGCAGAGATGGCCAGAAGACATAGTTTGGCACCCAAACGGAAACAGCTTGCTTTCGGTATATAGTGCTGATGGTCTAGACTCTCAAATATCAGTTACGGACTTCAGTAGAGTAAAAGATGGTGGGATATCAAATTATGTCAATTTCTTAGAGGACAAACCTCACACGAAGGGTGTTATAAATAGCATTGCTTTTCTGCCTCGGGAGAATACCAGTTTTGTAACCGGAGGAACCGACCATGCTGTCGTATTGTGGCGTGAGAATGGTCATAACAAATGGAAGCCAGAAGCATTGCACAGGAATCTTCATTCTTCAGCCGTTATGGGGGTATCTGGTATGCAGTACAGGCAACTTGTGTTGTCTGTCGGCAAAGACAAGAGAATTTTGGGGTACGATGCTCATGTAGGAAGAACAGATTTCAAGCAGCAAGTTGATAGTAAATGTTTGAGTGTTCTGCCAAATCCGTGTGACTTCAATTTATTCATGGTTCAAACGGGAACTCCTGAGAGGCAGCTTCGATTTTTTGATATTAGATCAAAACGGACAGAACTTCATGCCTTTGGATGGAAGCAAGAAAGCAGTGAGTCTCAGTCAGCTCTGATAAATCAGGCTTGGTCTCCAAATGGAGTCTACATCACATCTGGTTCAGCTGATCCCATGTTTCACATATTTGACATAAGATATAATGGTCGTAAACCTTCCCAATCTATAGAATCTCATGACAAACGAGTCTTCAGAGTCATGTGGCTTCGCTCTCTTCCCTTGCTCATTTCCATATCATCTGATCTCAGACTTGGGTTACACCAAGTTGTGTAG 1542 0.4293 MEHHENGVVNGRQEHEEALLALVEHRTREVKHLRYYISYYTSQLEEAEKRLLESKSKLALLRGVTSASSSHVDAEQVKVERESKIGSFHKSDGSCSSKNHLQSGLRLAHVGSKCSHSVPLPPSSLARVKVKSEKNQTQSISTERESIEVQGRGSKRKVFEQKEAEEVIRLICKNSKPESVLFQTSYYPCSSQHKRRLRCIAVSPVNDRQFVTSALDGVVNVWEVFQSKSNPHLITSTNCISPQQRWPEDIVWHPNGNSLLSVYSADGLDSQISVTDFSRVKDGGISNYVNFLEDKPHTKGVINSIAFLPRENTSFVTGGTDHAVVLWRENGHNKWKPEALHRNLHSSAVMGVSGMQYRQLVLSVGKDKRILGYDAHVGRTDFKQQVDSKCLSVLPNPCDFNLFMVQTGTPERQLRFFDIRSKRTELHAFGWKQESSESQSALINQAWSPNGVYITSGSADPMFHIFDIRYNGRKPSQSIESHDKRVFRVMWLRSLPLLISISSDLRLGLHQVV* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2894 513 Pfam WD domain, G-beta repeat 444 467 IPR001680 GO:0005515
Pvu2g2894 513 SUPERFAMILY WD40 repeat-like 195 504 IPR036322 GO:0005515
Pvu2g2894 513 SMART WD40_4 285 328 IPR001680 GO:0005515
Pvu2g2894 513 SMART WD40_4 430 467 IPR001680 GO:0005515
Pvu2g2894 513 SMART WD40_4 184 223 IPR001680 GO:0005515
Pvu2g2894 513 SMART WD40_4 334 374 IPR001680 GO:0005515
Pvu2g2894 513 SMART WD40_4 472 511 IPR001680 GO:0005515
Pvu2g2894 513 SMART WD40_4 233 276 IPR001680 GO:0005515
Pvu2g2894 513 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 4 512 - -
Pvu2g2894 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 224 IPR001680 GO:0005515
Pvu2g2894 513 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 4 512 - -
Pvu2g2894 513 Gene3D - 114 390 IPR015943 GO:0005515
Pvu2g2894 513 Coils Coil 44 64 - -
Pvu2g2894 513 Gene3D - 391 512 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2894 Pvu-Chr2 44514714 44517886 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2894 - - ccaj:109813667 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2894 2 44514714 44517886 Pvu9g1665 9 23381846 23387260 PCT