Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2858 ATGGCAGCTCTGGTCATTCCTGCAACAAGTGAGAAACTGGTTGAAACTGATTGGATGAAAAATATTGAAATCTGTGAATTAGTCGCTCATGATCAAAGGCAGGCTAGAGATGTTGTCAAAGCTATAAAGAAGAGGTTGGGTTTCAAGAACCCTAATATTCAACTTTATGCAGTCTTGTTGCTAGAAATGTTGATGAACAATATTGGAGATCATGTTCACCAGCAGGTGATTGATACAGGAATCATCCCTATTCTTGTAAAAATTGTGAAGAAAAAATCAGATTTGTCTGTAAGGGAGCGGATATTTCTGCTACTAGATGCCACACAAACATCCCTTGGTGGTGCTTCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGAGTGCTGGGGTGCAGTTTCCTCAAAGGGATCAAGTGACCCAATCAAATCGTCCTCATCCACAACTTAATGGGATTAACAATGTACCGAAGACAGATCAGGCTCCGACTAGACATCAGCAAGTAGAGTCCCAAACTGTTGCTGAATCTAGCATTATTCAAAAGGCTAGTAATGCGTTAGAAGTTTTAAAAGAAGTCCTTGATGCTATTAATACCCAGCATCCTCAGGCAGCAAATGATGAATTCACTCTTGACCTTGTTGAACAGTGTTCATTTCAGAAGCAAAGGGTAATGCATCTTGTGATGACTTCTCGTGATGAGAGGATAGTTTCTCGAGCAATTGAATTAAACGAGCAACTCCAGAAAGTTCTTACAAGACATGATGCACTTCTTTCCGGCAGAGGCATGACAATAGCTAATCACTTGGAGTGTGAAGAAGCAGAAGAGGAAGAAGAACCAGAACAGTTATTCCGGAGATTACGCAAAGGAAAGGCTTGTGCAAGGCCTGAAGATGAAGAAAGGGAAGCCGAGTTCCCTCACTTTGGTTTGCTTGAAGAGAGACTCAATCGTCCATTAATAAGACCACTATCTTTGGAGCCATCTCGAGAAGCTAATAAATCTCCTGCACCTGCTGTGATTCCTCCTCACATGGTAATTCCTCCACCACCTTCAAAACACATTGAGAGGGAGAGATATTTTCAGGAAAATAAAAGGGATGGTGCTACTTTGGTTGGTCATTTGAGAGGCCTTTCCTTGCATAGTCACAATGGCAGCAGCTCTCACAGTGGAAGCTTTGATTTTAGTGATTGA 1197 0.4135 MAALVIPATSEKLVETDWMKNIEICELVAHDQRQARDVVKAIKKRLGFKNPNIQLYAVLLLEMLMNNIGDHVHQQVIDTGIIPILVKIVKKKSDLSVRERIFLLLDATQTSLGGASGKFPQYYNAYYDLVSAGVQFPQRDQVTQSNRPHPQLNGINNVPKTDQAPTRHQQVESQTVAESSIIQKASNALEVLKEVLDAINTQHPQAANDEFTLDLVEQCSFQKQRVMHLVMTSRDERIVSRAIELNEQLQKVLTRHDALLSGRGMTIANHLECEEAEEEEEPEQLFRRLRKGKACARPEDEEREAEFPHFGLLEERLNRPLIRPLSLEPSREANKSPAPAVIPPHMVIPPPPSKHIERERYFQENKRDGATLVGHLRGLSLHSHNGSSSHSGSFDFSD* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2858 398 MobiDBLite consensus disorder prediction 328 353 - -
Pvu2g2858 398 MobiDBLite consensus disorder prediction 141 177 - -
Pvu2g2858 398 MobiDBLite consensus disorder prediction 379 398 - -
Pvu2g2858 398 Coils Coil 182 202 - -
Pvu2g2858 398 CDD GAT_GGA_like_plant 181 259 - -
Pvu2g2858 398 Gene3D - 1 135 IPR008942 -
Pvu2g2858 398 ProSiteProfiles VHS domain profile. 8 137 IPR002014 GO:0035091|GO:0043130
Pvu2g2858 398 SUPERFAMILY GAT-like domain 165 262 - -
Pvu2g2858 398 Pfam GAT domain 187 262 IPR004152 GO:0035091|GO:0043130
Pvu2g2858 398 ProSiteProfiles GAT domain profile. 173 261 IPR004152 GO:0035091|GO:0043130
Pvu2g2858 398 CDD VHS 1 129 - -
Pvu2g2858 398 Gene3D - 170 268 IPR038425 -
Pvu2g2858 398 SMART VHS_2 1 133 IPR002014 GO:0035091|GO:0043130
Pvu2g2858 398 Pfam VHS domain 6 111 IPR002014 GO:0035091|GO:0043130
Pvu2g2858 398 PANTHER TOM1-LIKE PROTEIN 1 398 IPR044836 GO:0035091|GO:0043130|GO:0043328
Pvu2g2858 398 MobiDBLite consensus disorder prediction 381 398 - -
Pvu2g2858 398 SUPERFAMILY ENTH/VHS domain 3 139 IPR008942 -
Pvu2g2858 398 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 1 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2858 Pvu-Chr2 44196549 44201865 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2858 - - gmx:100802949 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2858 2 44196549 44201865 Pvu2g2858 2 44196549 44201865 ECH
Pvu2g2858 2 44196549 44201865 Pvu9g1627 9 22880190 22886852 PCT