Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2688 ATGGGTGGTGGTGGGAGAGGAGGCAGGTCCCGCACTCAAAGAAAGCATTTCCGTCAGAGCAGAGAGAACGTGTGGAAGCGTTCCAAATCGGATACCGATCCTTCTTCAACAGAAAACAATCCTGCATGGACTCCTTTCTCCACCGAGAACGCCGCTTTCGATTTCTACTACAAAGAACAGGGAATAGTCGACCTTCAACAGTGGGACCAATTCGTTGCTGTTCTCCGGACTCCATTGCCCGCAACCTTCAGAATTAACTCTAGTAGCCAGTTTTCCGACGACATTCGTTCTCAATTGGAGAATGATTTCGTGCATTCTCTTCGCGACGAGGTTGGTGAAGGGGGTGAGACTGAGGCTATTCGGCCGTTGCTGTGGTACCCTGGGAATTTTGCTTGGCATTCAAATTTTTCTAGGATGCAGCTTAGGAAGAATCAAACGCTTGAGAGGTTCCATGAATTTTTAAAGCTAGAAAACGAGATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTCTTCTTGGATGTGCATTCAGATCATTTTGTGCTTGATATGTGTGCTGCACCTGGTTCAAAAACATTCCAACTGCTTGAGATTATTCACGAATCAAGTAAATCGGGATCCCTGCCTGATGGAATGGTTATAGCAAATGATCTCGATGTCCAAAGATGCAATCTTCTCATCCACCAAACAAAAAGAATGTGCACAGCCAATCTAATTGTTACAAATCATGAAGCACAACACTTCCCAGGATGTCGATTAAACAGAAACTATGAAAGGATGGAAGATCACAATATTGGCCAACTATTATTTGATCGTGTTCTTTGTGATGTCCCATGCAGTGGAGATGGTACCCTTCGCAAGGCACCTGATCTCTGGAGAAAATGGAACCCAGGGATGGGACATGGCCTTCACGGCCTACAAATTTTAATTGCTATGCGAGGTTTATCTTTACTCAAAATTGGTGGAAGAATTGTTTATTCAACCTGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTTCTGAGGTTTTGCGTAGGTGTGGAGGTTCTGTTAAACTTGTTGATGTCTCTAGTGAGCTTCCACAACTTATTCGTCGGCCAGGTCTCAAGAGATGGAAGGTATATGACAAGGGCACCTGGTTTGTCTCGTATAATGATGTTCCTAAGTTTCGTAGAAGTGCAGTTCTTTCCAGTATGTTTCCTTCTGGTAGAGGTCATCGTGATGTCGATAGTAGTTGTAATGTTAACGTGGAGGATGTTACTAATGGTATTAATGAAAACGCCGGAGATGGTGTTCAACCAGTACAAAATCCTGTGATGTCTGAATCTGATGAGGAAGTTTCTGATTTCCCTCTAGAGCATTGTATGAGGATAGTGCCTCATGATCAGAATACCGGAGCCTTCTTCATTGCTGTTCTGCAAAAAGTTTCTCCTCTACCTGTAATTCCAGAAAAAACAAAAATAAAAATTGACGACCAATGTGTAGAACCAGCAAACCAGAGTCTTGATGATGCACAAGTACAACAGATCACTTCACCAGAAAATGCACGTGAAGAAAAGTTGGAAGTAGTTTCAGAGGTAAATGTAGATGACAATGAACCCAATACCGAAGATATGGAAGGTGAAGACTTGAAAGCAGTTTCAGAGGAAAATGTAGACAATGAACCCAATACCGAAGATATGGAAGATGATCCTGATACACGTGAAGAACAGAATACCAAGGAAACTCTAGTGCCTGATAATGTACAAAACCCGATGAAGAGGGTTGCAGGCAAGAGAAAGCTACAAATTCAGGGGAAATGGAGGGGTGTTGACCCTGTTGTCTTTTTCAAAGATGAAACAATAATTAATAGTATAAGGGATTTTTATGGAATTGATGAGCGTTTTCCATTCAACAATCACCTTGTTACAAGAAATAGTGATACAAATCATGTGAAAAGAATTTATTATATCTCCAAGTCTGTCAAGGATGTTCTTGAGCTGAACTTCAAAGTTGGGCAGCAACTTAAAATAACCTCAATTGGCCTGAAGATGTTTGAAAGACAGACAGCACGAGAAGGTAGCTCTGCACCGTGTGCTTTCCGGATATCGTCTGAAGGATTGCCCCTTATTCTCCCATACATAACCAAACAGATTCTGCATGCTTCTCCCGCAGACTTCAAGCATCTTCTGCAGAACAAAGAAGTAAAATTTGAAGATTTTGCTGATGCCAAGTTCGGTGAAAAGGCAGCAAACCTATTGCCCGGCTGTTGTGTGGTAATTCTGGGTACAGGAAACACAGTTGCTGTAGAGTCTCTCCGAGTGGATGAGTCAACGATAGCCATTGGATGCTGGAGGGGTAGAGCGAGATTGTCTGTGATGGTTACTGCAACGGACTGCCAAGAACTACTTGAAAGGCTTTTAATACGTTTTGACAATGGAAATGGTTCATCTGGGCATGTCGACAAATCCTCTAATAATGAGGAAGAAATAGGAGCCGTGCAAGAGTAA 2502 0.4257 MGGGGRGGRSRTQRKHFRQSRENVWKRSKSDTDPSSTENNPAWTPFSTENAAFDFYYKEQGIVDLQQWDQFVAVLRTPLPATFRINSSSQFSDDIRSQLENDFVHSLRDEVGEGGETEAIRPLLWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHESSKSGSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNRNYERMEDHNIGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNPGMGHGLHGLQILIAMRGLSLLKIGGRIVYSTCSMNPIENEAVVSEVLRRCGGSVKLVDVSSELPQLIRRPGLKRWKVYDKGTWFVSYNDVPKFRRSAVLSSMFPSGRGHRDVDSSCNVNVEDVTNGINENAGDGVQPVQNPVMSESDEEVSDFPLEHCMRIVPHDQNTGAFFIAVLQKVSPLPVIPEKTKIKIDDQCVEPANQSLDDAQVQQITSPENAREEKLEVVSEVNVDDNEPNTEDMEGEDLKAVSEENVDNEPNTEDMEDDPDTREEQNTKETLVPDNVQNPMKRVAGKRKLQIQGKWRGVDPVVFFKDETIINSIRDFYGIDERFPFNNHLVTRNSDTNHVKRIYYISKSVKDVLELNFKVGQQLKITSIGLKMFERQTAREGSSAPCAFRISSEGLPLILPYITKQILHASPADFKHLLQNKEVKFEDFADAKFGEKAANLLPGCCVVILGTGNTVAVESLRVDESTIAIGCWRGRARLSVMVTATDCQELLERLLIRFDNGNGSSGHVDKSSNNEEEIGAVQE* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2688 833 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 529 812 IPR023267 GO:0001510
Pvu2g2688 833 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 5 543 IPR023267 GO:0001510
Pvu2g2688 833 ProSitePatterns NOL1/NOP2/sun family signature. 274 285 IPR018314 GO:0003723|GO:0008168
Pvu2g2688 833 PRINTS RNA (C5-cytosine) methyltransferase signature 186 196 IPR023267 GO:0001510
Pvu2g2688 833 PRINTS RNA (C5-cytosine) methyltransferase signature 275 287 IPR023267 GO:0001510
Pvu2g2688 833 PRINTS RNA (C5-cytosine) methyltransferase signature 325 341 IPR023267 GO:0001510
Pvu2g2688 833 PRINTS RNA (C5-cytosine) methyltransferase signature 462 479 IPR023267 GO:0001510
Pvu2g2688 833 Pfam 16S rRNA methyltransferase RsmB/F 176 358 IPR001678 GO:0008168
Pvu2g2688 833 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 54 480 IPR029063 -
Pvu2g2688 833 MobiDBLite consensus disorder prediction 1 45 - -
Pvu2g2688 833 Gene3D Vaccinia Virus protein VP39 50 390 IPR029063 -
Pvu2g2688 833 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 71 480 IPR001678 GO:0008168
Pvu2g2688 833 MobiDBLite consensus disorder prediction 504 579 - -
Pvu2g2688 833 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 5 543 - -
Pvu2g2688 833 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 529 812 - -
Pvu2g2688 833 MobiDBLite consensus disorder prediction 504 518 - -
Pvu2g2688 833 MobiDBLite consensus disorder prediction 17 33 - -
Pvu2g2688 833 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 132 153 IPR023270 GO:0016428
Pvu2g2688 833 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 359 378 IPR023270 GO:0016428
Pvu2g2688 833 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 673 685 IPR023270 GO:0016428
Pvu2g2688 833 MobiDBLite consensus disorder prediction 814 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2688 Pvu-Chr2 42752844 42764108 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2688 K15334 - gmx:100808859 1429.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2688 2 42752844 42764108 Pvu2g2688 2 42752844 42764108 ECH
Pvu2g2688 2 42752844 42764108 Pvu1g2617 1 51071623 51078785 PCT