Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2617 ATGGGGAGAGGAAAAGGAGGGAAGAGTCGCACTCAAAGAAAGCATTTCCAAGAGAGCAGAGAGAATGTGTGGAACTCGAAACGTGCTCGATCAGATTCAGATCCTATTCCTTTCTCCAACCCCTTCGCTACTCAGAACCTCGCTTTCGATCACTATTACAAGGAACAGCGAATCGTGTCATCGCAAGAATGGGATGCATTCGAGCAACTTCTCAGAACTCCTTTGCCCGCAGCATTCAGGATCAATTCCACTAGCCTGTTTTGTGCGGATATTCGGTCTCAACTAGAGAATGATTTTGCGCACTCACTTCAGGCTGAGGTTGTGGAAGGGGATGATACAGCGGCTATTTTACCTTTGCCATGGTATCCTGAGAATCTTGCATGGCATTCGAATTTTTCGCGTAAGCAGCTCAGGAAGAATCAAACACTTCGGAGGTTTCATGAATTCTTAAAGGTAGAAAATGAAATTGGAAATATTACGAGACAGGAAGCTGTCAGCATGGTACCTCCCTTGTTTTTGGATGTACATTCAAATCATTTTGTACTTGATATGTGTGCAGCGCCTGGTTCAAAAACATTTCAATTGCTTGAGATTTTACACCATTCAACTAAAGTAGGATCTCTGCCCGATGGAATGGTTATAGCAAATGATCTAGATATCCAAAGATGTAATCTTCTCATTCACCAAACAAAACGGATGTGCACAGCCAACCTAATTGTCACCAATCATGAAGCTCAACACTTCCCAGGATGTCTCTTGAAAAAACATTATGATAAAATGGAGCTAGATCAACCAGCCCAGTTATTATTTGATCGTGTTCTGTGCGATGTCCCATGCAGCGGAGATGGCACCCTTCGTAAGGCCCCTGATCTTTGGAGGAAATGGAACACAGGGACTGGAAATGGCCTTCATAACCTACAAGTTCTAATTGCAATGCGAGGTGTATCTTTACTTAAAGTTGGTGGAAGAATGATTTATTCAACCTGCTCAATGAATCCTATTGAGAATGAAGCGGTTGTTGCAGAGGTTTTGCGAAGGTGTGAAGGGTCCATTGAACTTGTAGATGTCTCTAGTCAATGTCCCCAACTCACTCGTCGACCAGGTCTTAGGAGATGGAGGGTATGCGACAAGGGGAAGTGGTTTATCTCTAGCAAAGATGTTCCCAAGTCTCATAGAAATGTAGTTCTTCCCAGCATGTTTCCAAATGGCGGAAGCTATCAGGATGTTGGTGATAGTAATAGTAATATCATCATTGAAGGTGATAGTAATAGTAATATCATCATTGACGGTGATATTAATACTGATGATGTTAAGGGACATACTGAAGAAGATGTTCAAGCAGTGGAGAATCCTGTGATGCTCGAATTTACTGAGGAAGATTCTGATTCCCCACTAGAGCGGTGCATGAGGCTTGTGCCTCATGATCAGAATACTGGAGCCTTCTTTATTGCTGTTCTGCAGAAAGTTTCTGATCTTCCTGCAATCCAGGTAAAACCTAGAAAAGAAGTTGGGAAACAAGTTGGCGCAGCAAACCAGGGCAATGAGGATGCACAAGAACTGCATGTTAATCCATTGGAAAGTATTCCTGAAGGAATTTCAGAGGCTAATATAAAAGAAAGTGAACCAAATAAAATAGATTTGAAAGTTAATTCTGTTACATGTGAAGAAGAGGATTTCAAGGAAGTTCAAGATCCCGGCGGTGTAGAAATCATAACAAAGAATACTCCAGGCAAAAGGAAACTGCAGTTTCAAGGCAAATGGAGAGGCATTGACCCTGTTGTCTTCTTCAAAGACGAAGGAGTTATTAACAGCATAAAGGAATTTTATGGTATTGATGATCAATTTCCATTTAATGGTCACCTTGTAACAAGAAACAGTGATACAAGTCATGTGAAAAGAATTTACTATATATCCAAGTCAGTCAAAGATGTTCTGGAGTTGAACTTCTCAGCGGGGCAGCAACTTAAAATAACTTCTGTTGGCCTGAAGGTTTTTGAAAGACAAACTTCATGTGAAGGAAGATCTGCACAATGTTCTTTCCGGATCACTTCTGAAGGATTGCCCCTTCTTCTCCCTCACATTTCCAAACAGATTCTACGTGCATCTGCCATAGATTTCAAGCATCTTCTGCAGTACAGAGCTGTAAAATTTGCAGATTTTGTCGATGCCAAGTTCGGAGAAAGTGCTGCAAACCTAATGCCCGGCTGTTGCGTGATAGTTCTGGGTGAAGGGAGCAGAGCTGCTACAGGGACCCTCCAAGTGGACGAGTCAACTGTAGCCATTGGGTGCTGGAAGGGTAGAGCAAGTTTGACTGTGATGGTTGGTGCATTGGAATGCCAAGAACTGCTCCAAAGGCTTTTAATGCGTCTAGATACACTAACACAAAAGGACTCCTCCATGCATGAGGACCAACCGTCTGATACCAATGGAGATGAAGCACAAGTGGCAAACGGTAAAAACGAAGATGTGGAAGTTACTGGGTGTTAG 2487 0.425 MGRGKGGKSRTQRKHFQESRENVWNSKRARSDSDPIPFSNPFATQNLAFDHYYKEQRIVSSQEWDAFEQLLRTPLPAAFRINSTSLFCADIRSQLENDFAHSLQAEVVEGDDTAAILPLPWYPENLAWHSNFSRKQLRKNQTLRRFHEFLKVENEIGNITRQEAVSMVPPLFLDVHSNHFVLDMCAAPGSKTFQLLEILHHSTKVGSLPDGMVIANDLDIQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCLLKKHYDKMELDQPAQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGTGNGLHNLQVLIAMRGVSLLKVGGRMIYSTCSMNPIENEAVVAEVLRRCEGSIELVDVSSQCPQLTRRPGLRRWRVCDKGKWFISSKDVPKSHRNVVLPSMFPNGGSYQDVGDSNSNIIIEGDSNSNIIIDGDINTDDVKGHTEEDVQAVENPVMLEFTEEDSDSPLERCMRLVPHDQNTGAFFIAVLQKVSDLPAIQVKPRKEVGKQVGAANQGNEDAQELHVNPLESIPEGISEANIKESEPNKIDLKVNSVTCEEEDFKEVQDPGGVEIITKNTPGKRKLQFQGKWRGIDPVVFFKDEGVINSIKEFYGIDDQFPFNGHLVTRNSDTSHVKRIYYISKSVKDVLELNFSAGQQLKITSVGLKVFERQTSCEGRSAQCSFRITSEGLPLLLPHISKQILRASAIDFKHLLQYRAVKFADFVDAKFGESAANLMPGCCVIVLGEGSRAATGTLQVDESTVAIGCWKGRASLTVMVGALECQELLQRLLMRLDTLTQKDSSMHEDQPSDTNGDEAQVANGKNEDVEVTGC* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2617 828 ProSitePatterns NOL1/NOP2/sun family signature. 270 281 IPR018314 GO:0003723|GO:0008168
Pvu1g2617 828 Gene3D Vaccinia Virus protein VP39 45 384 IPR029063 -
Pvu1g2617 828 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 1 802 IPR023267 GO:0001510
Pvu1g2617 828 MobiDBLite consensus disorder prediction 1 37 - -
Pvu1g2617 828 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 128 149 IPR023270 GO:0016428
Pvu1g2617 828 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 355 374 IPR023270 GO:0016428
Pvu1g2617 828 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 655 667 IPR023270 GO:0016428
Pvu1g2617 828 MobiDBLite consensus disorder prediction 797 828 - -
Pvu1g2617 828 Pfam 16S rRNA methyltransferase RsmB/F 172 356 IPR001678 GO:0008168
Pvu1g2617 828 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 61 489 IPR029063 -
Pvu1g2617 828 MobiDBLite consensus disorder prediction 11 28 - -
Pvu1g2617 828 PRINTS RNA (C5-cytosine) methyltransferase signature 182 192 IPR023267 GO:0001510
Pvu1g2617 828 PRINTS RNA (C5-cytosine) methyltransferase signature 271 283 IPR023267 GO:0001510
Pvu1g2617 828 PRINTS RNA (C5-cytosine) methyltransferase signature 321 337 IPR023267 GO:0001510
Pvu1g2617 828 PRINTS RNA (C5-cytosine) methyltransferase signature 471 488 IPR023267 GO:0001510
Pvu1g2617 828 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 67 489 IPR001678 GO:0008168
Pvu1g2617 828 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 1 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2617 Pvu-Chr1 51071623 51078785 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2617 K15334 - gmx:100808598 1350.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2688 2 42752844 42764108 Pvu1g2617 1 51071623 51078785 PCT