Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2661 ATGCTTCTAGAGCTGGAGACTTGGACTGCTTTGCTTGTTTTGTTTTTGCTTGTGTTGATTCTAAAGGAGTCGATCATGGGAAGTAAGAGTTCGAAAGTGTCTGAAAGAAGGCATGTTTCATCGTATGGATCTGGTGGTTCTTCGTCTTCATGGGATAACTATGGATACCCTCAGACACCAAATGCTTATCCACAACAAAACATTTATCATACGCCTATTCATAACCGTGTCCCCGCTCCATTCCACGACTATTCACAGCCAAAAAGGAGGTTGGATAGGAGATTCTCCAGAATAGCTGATGATTACAATTCACTGGATGAGGTTACCAGTGCTCTTTCACACGCAGGACTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAACGAGTGGACAGGCAAGAGGTCGTTCAACCGAAAAAGCTTACATCATATAGGAAGTGATCATAATCCTTATGAACAAGCAATATCGATTATTGGGAAAACTTTAAGTGCTTTTGATGAGGATAATTTGATTCCTTGTTTTGGTTTTGGAGATGCATCAACGCATGATCAAGATGTCTTTAGTTTCCATTCAGATGAGAGTTTCTGCAATGGATTTGAGGAAGTTCTGTCAAGATATAGAGATATCATTCCCTGCCTACGTCTAGCAGGACCCACTTCATTTGCTCCTATTATTGAGATGGCTATGACTATAGTTGAACAAAGTGGGGGCCAATATCATGTCTTGCTAATAATTGCTGATGGACAGGTGACCAGAAGTGTTGACACTCAACATGGCAAGTTAAGTCCCCAAGAACTGAAGACAATTGATGCAATTGTAAAAGCCAGCGAGTATCCGCTTTCAGTAGTTTTGGTGGGGGTAGGAGATGGACCGTGGGAAATGATGAGGGAATTTGATGATAACATTCCAGCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACCGAAATAATGTCAAGGAGCGTAGATTCAAAAAGAAAAGAGACAGACTTTGCTCTATCAGCTTTGATGGAGATACCTGCTCAATATAAGGCAACTATAGATTCTGGCATACTGGGTGCACGGAGGGGACATTCACCGGACAGGGTTCCTCTGCCTCCACCTCACTATGAGAGGACTTCTAGCAGCAGCATAGCATCTTTTCGTCCAAACAGTTCTCAGCAAAGTGCACCTGCATATTCTGGCTTTGATAATGTTAACACGGCATCATCTTCAGGTGGCTTATATGATAACAAGGTTTGTCCAATTTGTCTTACTAACGGGAAGGACATGGCATTTGGTTGCGGGCATCAGACTTGTTGTGAATGTGGAGAAAGCCTCGAATTCTGCCCCATATGCCGAACCACAATCACTACAAGAATAAAGCTTTACTAG 1389 0.4212 MLLELETWTALLVLFLLVLILKESIMGSKSSKVSERRHVSSYGSGGSSSSWDNYGYPQTPNAYPQQNIYHTPIHNRVPAPFHDYSQPKRRLDRRFSRIADDYNSLDEVTSALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGSDHNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFHSDESFCNGFEEVLSRYRDIIPCLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQHGKLSPQELKTIDAIVKASEYPLSVVLVGVGDGPWEMMREFDDNIPARAFDNFQFVNFTEIMSRSVDSKRKETDFALSALMEIPAQYKATIDSGILGARRGHSPDRVPLPPPHYERTSSSSIASFRPNSSQQSAPAYSGFDNVNTASSSGGLYDNKVCPICLTNGKDMAFGCGHQTCCECGESLEFCPICRTTITTRIKLY* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2661 462 CDD RING-HC_RGLG_plant 418 462 IPR045317 GO:0061630|GO:0070534
Pvu2g2661 462 SUPERFAMILY RING/U-box 413 458 - -
Pvu2g2661 462 MobiDBLite consensus disorder prediction 361 399 - -
Pvu2g2661 462 SUPERFAMILY vWA-like 121 303 IPR036465 -
Pvu2g2661 462 MobiDBLite consensus disorder prediction 375 399 - -
Pvu2g2661 462 ProSiteProfiles Zinc finger RING-type profile. 419 452 IPR001841 -
Pvu2g2661 462 PANTHER RING-FINGER PROTEIN 26 462 - -
Pvu2g2661 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 462 IPR013083 -
Pvu2g2661 462 PANTHER COPINE FAMILY PROTEIN 1 26 462 - -
Pvu2g2661 462 Pfam Zinc finger, C3HC4 type (RING finger) 416 457 - -
Pvu2g2661 462 Pfam Copine 144 356 IPR010734 -
Pvu2g2661 462 SMART VWA_4 119 322 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2661 Pvu-Chr2 42475348 42480510 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2661 K16280 - gmx:100800161 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2661 2 42475348 42480510 Pvu2g2661 2 42475348 42480510 ECH
Pvu2g2661 2 42475348 42480510 Pvu1g2642 1 51243367 51248675 PCT