Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2642 ATGAATCTGGAGATAGAGACTTGGACAGTTTTGGTTGCTATTCTGTGCATCTTGGTGTTTGTTGTGAAGGAGTTTGTTATGGGGGCCAAGAGTTCAAAAGAAAGTGGTAGGAGGTATGAGTTTGGTGCTTCTTCATCTTCCTGGGATCATATCAATAATAATTATGGTGGATACCCCCCACAATCACCATATCCTTCTTATCAAACACCTCGGCACCAGCATGCATCTGCATCAACTCCATTTTATGATAATGCTCAGCCAAAAAGGAAGCTTGATAGGAAGTATTCAAGGATTGCTGATAATTACCGTTCCTTAGATGAGGTTACTGCTGAACTTGCAAATGCTGGGTTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGAGGTCATTCAATCGAAAAAGTTTACATGATATTGGAAGTTGTCAAAACCCGTATGAGCATGCAATTTCAATTATTGGGAAAACTTTATCTGCTTTTGATGAAGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCTTCTACACATGATCAAGATGTATTTAGTTTCTTTTCGGAAGAGAGGTTCTGCAACGGATTCGAGGAAGTTCTGTCACGATACAGAGAAATTACTCCTCACCTCAAACTTGCAGGACCCACTTCATTTGCCCCTATCATTGAAATGGGCATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTGATAATTGCAGACGGACAGGTGACTAGAAGCGTAGACACACAACATGGCAACTTAAGTCCACAAGAGAGGAACACAATTGATGCAATAGTTAAAGCAAGTGAGTATCCACTTTCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGATGATAACATCCCTTCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACGGAAATAATGACAAAGAATGTAGATTCAACTAGAAAAGAGACAGATTTTGCCCTTTCAGCTTTGATGGAGATACCTTCTCAGTATAAGGCAACCATAGAGCATGGCATATTGGGTGGAAGGAGGGGACATTCACCAGATAGGGTTGCTCTACCCCCACCTCTTTATGGTAGAACTTCTTCCAACATCAACACAAAATCAACAAGGTCCAACAGTTTTCAGCAGAGGCCACCTACACGTACCAGCTATGACAACAGTGTTCACACAGAAGCATCTGCAAGTTCTTTATATGATAACAAGGTTTGCCCGATTTGTCTGACCAATTCGAAGGATATGGCCTTTGGGTGTGGGCATCAGACTTGTTGTGAGTGTGGAGAAGACCTCCAATACTGCCCCATTTGCCGGAGAACGATCCACACTAGAATAAAGCTTTACTAG 1395 0.4136 MNLEIETWTVLVAILCILVFVVKEFVMGAKSSKESGRRYEFGASSSSWDHINNNYGGYPPQSPYPSYQTPRHQHASASTPFYDNAQPKRKLDRKYSRIADNYRSLDEVTAELANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHDIGSCQNPYEHAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFFSEERFCNGFEEVLSRYREITPHLKLAGPTSFAPIIEMGMTIVEQSGGQYHVLLIIADGQVTRSVDTQHGNLSPQERNTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPSRAFDNFQFVNFTEIMTKNVDSTRKETDFALSALMEIPSQYKATIEHGILGGRRGHSPDRVALPPPLYGRTSSNINTKSTRSNSFQQRPPTRTSYDNSVHTEASASSLYDNKVCPICLTNSKDMAFGCGHQTCCECGEDLQYCPICRRTIHTRIKLY* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2642 464 SUPERFAMILY vWA-like 121 303 IPR036465 -
Pvu1g2642 464 MobiDBLite consensus disorder prediction 357 405 - -
Pvu1g2642 464 PANTHER COPINE FAMILY PROTEIN 1 27 464 - -
Pvu1g2642 464 Pfam Copine 144 356 IPR010734 -
Pvu1g2642 464 MobiDBLite consensus disorder prediction 59 83 - -
Pvu1g2642 464 CDD RING-HC_RGLG_plant 420 464 IPR045317 GO:0061630|GO:0070534
Pvu1g2642 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 464 IPR013083 -
Pvu1g2642 464 Pfam Zinc finger, C3HC4 type (RING finger) 418 458 - -
Pvu1g2642 464 PANTHER RING-FINGER PROTEIN 27 464 - -
Pvu1g2642 464 MobiDBLite consensus disorder prediction 376 405 - -
Pvu1g2642 464 ProSiteProfiles Zinc finger RING-type profile. 421 454 IPR001841 -
Pvu1g2642 464 SMART VWA_4 119 322 IPR002035 -
Pvu1g2642 464 SUPERFAMILY RING/U-box 414 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2642 Pvu-Chr1 51243367 51248675 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2642 K16280 - gmx:100798816 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2661 2 42475348 42480510 Pvu1g2642 1 51243367 51248675 PCT