Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1600 ATGGCAGTCACCAAAAGCCTCTCAATATTTCTCTTCGTCGCCGTGATCTGCGCCGCCGCAGCCCAGGCCGCGCAGTTCAACGTCACAAACAACTGCAACTTCACGGTGTGGGCCGCCGCCGTGCCCGGCGGAGGAGCAAGGCTGAACCCTAACGAGACATGGAGCATCGAGGTGGCGAACGGCACCACGGGAGGGCGCATTTGGGGCCGAACAAACTGCACCTTTGACGACGCGGGACGAGGTGAGTGCTTAACCGGCGACTGCGGCGGTGTTCTCGTGTGCAACAATACTCACGGTACACCCCCAAACACGCTGGTGGAATTCGGGGTGAACCAGTACAGCAACCTCGACTTCTACGACATCTCCCTGGTGGACGGTTTCAACCTTCCAATTCAGTTGAACCCGACATTTAACTGCAGCAGCGTAAAATGCGCCGCCAACATCATCGGAGAGTGCCCCACCGAACTGCAGGTTCCGGGCGGTTGTAACAACCCATGCACGGTTTTCAATACGACAGAGTACTGTTGTACCTCCGGTGCTTCGGGGTGCGGTCCCACCGATTATTCCAAGTTCTTCAAGGAGAGGTGCCCAGATGCGTACAGTTACCCTATGGATGATGCCACCAGCACATTCACTTGCATGGGAGGATCTGATTATAGGGTTGTGTTTTGCCCTTAA 678 0.5619 MAVTKSLSIFLFVAVICAAAAQAAQFNVTNNCNFTVWAAAVPGGGARLNPNETWSIEVANGTTGGRIWGRTNCTFDDAGRGECLTGDCGGVLVCNNTHGTPPNTLVEFGVNQYSNLDFYDISLVDGFNLPIQLNPTFNCSSVKCAANIIGECPTELQVPGGCNNPCTVFNTTEYCCTSGASGCGPTDYSKFFKERCPDAYSYPMDDATSTFTCMGGSDYRVVFCP* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1600 225 Gene3D Thaumatin 23 225 IPR037176 -
Pvu2g1600 225 PANTHER OS03G0233200 PROTEIN 1 225 IPR001938 -
Pvu2g1600 225 ProSiteProfiles Thaumatin family profile. 23 225 IPR001938 -
Pvu2g1600 225 SUPERFAMILY Osmotin, thaumatin-like protein 24 225 IPR037176 -
Pvu2g1600 225 Pfam Thaumatin family 30 225 IPR001938 -
Pvu2g1600 225 ProSitePatterns Thaumatin family signature. 79 94 IPR017949 -
Pvu2g1600 225 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Pvu2g1600 225 PRINTS Pathogenesis-related protein signature 44 53 IPR001938 -
Pvu2g1600 225 PRINTS Pathogenesis-related protein signature 66 77 IPR001938 -
Pvu2g1600 225 PRINTS Pathogenesis-related protein signature 79 108 IPR001938 -
Pvu2g1600 225 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Pvu2g1600 225 PRINTS Pathogenesis-related protein signature 215 224 IPR001938 -
Pvu2g1600 225 PIRSF PR5 1 225 IPR001938 -
Pvu2g1600 225 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 1 225 - -
Pvu2g1600 225 SMART tha2 26 225 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1600 Pvu-Chr2 29697177 29698139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1600 6 225 Receptor kinase-like Gene Family AT5G38280 36.585 5.99e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1600 - - gmx:100037479 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1600 2 29697177 29698139 Pvu2g2950 2 45042905 45043859 PCT