Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1184 ATGGCGACGACACGATCCGCGCCTCTCCTCAAGCATCTCCTGGCCCGCCTGAATCCGGTCCGATCCGTCACATACATGCCTCGACCCGGCGACGGCACCCCGCGGGCGGTGACGATGATCCCGGGCGACGGAATCGGTCCCCTAGTGACCGGCGCGGTGGAGCAGGTTATGGAGGCGATGCACGCGCCGCTGTACTTCGAGAAGTATGAGGTGTACGGCGACATGAAGGCGGTGCCGGCGGAGGTGCTGGAATCGGTGAGGAAGAACAAGGTATGTTTGAAGGGAGGGCTGGCGACGCCTATGGGCGGCGGTGTGAGCTCGCTGAACGTGCAGCTGAGGAAGGAGCTTGATCTCTACGCCTCGCTCGTTAACTGCTTCAACCTCCCTGGCCTTCCTACGCGCCACGATAACGTTGACATCGTCGTCATCAGGGAGAACACCGAAGGCGAGTACTCCGGCCTCGAACACGAGGTCGTTCCTGGCGTCGTCGAAAGCCTTAAGTTCTGTTCAGAGCGCATTGCTAAATATGCTTTCGAGTATGCTTACCTAAATAATAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAACTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAGGTATCCTAGTATCAAGTACAGTGAAATTATTGTAGACAACTGCTGCATGCAGCTTGTTTCAAAGCCTGAACAGTTTGATGTCATGGTAACCCCCAATCTTTATGGGAATCTTGTTGCAAATACGGCGGCAGGTATTGCTGGAGGCACCGGAGTCATGCCGGGAGGTAATGTCGGGGCTGATCACGCAGTGTTCGAACAAGGTGCTTCAGCAGGAAATGTTGGTAATGATAAAGTAGTAGAACAACAGAAAGCCAACCCAGTGGCACTCCTTCTTTCGTCGGCCATGATGCTTAGACATCTTCAGTTTCCTGCATTTGCTGACCGATTGGAAACTGCCGTTAAAAAAGTGATTTTGGAGGGTAAATATCGGACGAAGGACCTTGGTGGCACAAGCACCACACAAGAGGTTGTTGATGCAGTGATAGATGCTTTAGATTGA 1083 0.5245 MATTRSAPLLKHLLARLNPVRSVTYMPRPGDGTPRAVTMIPGDGIGPLVTGAVEQVMEAMHAPLYFEKYEVYGDMKAVPAEVLESVRKNKVCLKGGLATPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATRYPSIKYSEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNDKVVEQQKANPVALLLSSAMMLRHLQFPAFADRLETAVKKVILEGKYRTKDLGGTSTTQEVVDAVIDALD* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1184 360 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 33 358 IPR004434 GO:0006099
Pvu2g1184 360 Pfam Isocitrate/isopropylmalate dehydrogenase 37 355 IPR024084 -
Pvu2g1184 360 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 19 357 - -
Pvu2g1184 360 Gene3D Isopropylmalate Dehydrogenase 24 359 - -
Pvu2g1184 360 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 35 359 - -
Pvu2g1184 360 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 19 357 - -
Pvu2g1184 360 SMART Iso_dh_2 36 355 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1184 Pvu-Chr2 23295216 23299974 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1184 K00030 - gmx:100778831 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1184 2 23295216 23299974 Pvu2g1184 2 23295216 23299974 ECH
Pvu2g1184 2 23295216 23299974 Pvu3g2767 3 49516814 49520645 PCT