Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1179 ATGAAGTTAGACACTACCTTCTGCTTTGCCTTAGTTTCTATTTTGCTGGTAACCTCACCAGAGTTTCCTAGTGTCGTTGGAGACGATGTTGGCAGCATCATCAGCGAATCTTTATTTGAACAATTGCTGAAACACCGAAACGATCCAGTTTGTGAGGGTAAAGGGTTCTACACCTACAATGCTTTTCTCACAGCAGCAAGTTCCTTTGGAGCTTTTGGCAACACAGGTGATTTGGACACTCGCAAGAGGGAGCTTGTAGCTTTCCTAGCCCAATCCTCTCACGAGACCACAGGAGGATCACCAACTTCACCAGATGGACCATATGCATGGGGTTATTGCTTTGTAACAGAAAGAGATAAATCCAACAGGTACTGTGATGGGAAAGCACCATGTCCCGCAGGAAAATCATACTATGGTCGAGGGCCAATTCAACTGACACACAACTACAACTATGATCTAGCTGGAAATGCCTTAAAATTGGACCTGATAAACAATCCAGACTTGGTAGCCCACAATGCAGTGATATCATTCAAGACAGCTATATGGTTTTGGATGACACCACAGGATAATAAACCTTCATGCCACCAAGTGATCACTAATGCGTGGACACCATCTGCTACTGACATGGCAGCTAACAGAGTTCCAGGTTATGGTGTAATTACCAACATCATCAATGGTAAAGTTGAATGTGGGAATGTTCCCACTTCAAGCTCAGATAACAGGATCGGGTTTTATAAAAGCTTTTGTGACATTCTGGGACTCTCACATGGTGCCAACTTGGAATGTAGTAACCAAACGCCCTTTGGCAAATAA 813 0.4367 MKLDTTFCFALVSILLVTSPEFPSVVGDDVGSIISESLFEQLLKHRNDPVCEGKGFYTYNAFLTAASSFGAFGNTGDLDTRKRELVAFLAQSSHETTGGSPTSPDGPYAWGYCFVTERDKSNRYCDGKAPCPAGKSYYGRGPIQLTHNYNYDLAGNALKLDLINNPDLVAHNAVISFKTAIWFWMTPQDNKPSCHQVITNAWTPSATDMAANRVPGYGVITNIINGKVECGNVPTSSSDNRIGFYKSFCDILGLSHGANLECSNQTPFGK* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1179 270 CDD chitinase_GH19 34 262 - -
Pvu2g1179 270 Pfam Chitinase class I 33 262 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu2g1179 270 Coils Coil 270 270 - -
Pvu2g1179 270 PANTHER CHITINASE-RELATED 18 268 - -
Pvu2g1179 270 ProSitePatterns Chitinases family 19 signature 2. 175 185 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu2g1179 270 Gene3D Endochitinase, domain 2 116 171 - -
Pvu2g1179 270 PIRSF Endochitinase 6 269 IPR016283 GO:0004568|GO:0005975
Pvu2g1179 270 PANTHER CHITINASE (CLASS IB) / HEVEIN 18 268 - -
Pvu2g1179 270 Gene3D - 38 268 - -
Pvu2g1179 270 SUPERFAMILY Lysozyme-like 29 269 IPR023346 -
Pvu2g1179 270 ProSitePatterns Chitinases family 19 signature 1. 51 73 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1179 Pvu-Chr2 23180424 23182177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1179 29 268 Glycoside Hydrolase AT3G12500 59.917 5.94e-107 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1179 K20547 - gmx:100799642 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1179 2 23180424 23182177 Pvu3g2763 3 49471168 49472685 PCT