Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1108 ATGTCAGAGAGAATGACTATAGTTTCAGAGTGTTTCTTTGTTTTTCTCCTGCTTTGTTTATGTGGCTCCGTAGTTTGTGTCAAATACAATACTGGAGCAAGCATTGTGCCAGGCAAACTGAATGTTCATCTCGTTGCTCATTCCCATGACGATGTTGGCTGGCTCAAGACCGTTGATCAATACTATGTTGGGTCCAACAATAATATTCAGGGGGCATGTGTGGAGAATGTGCTGGATTCGGTGGTTATGTCTCTGCAGCGTGACCAAAACAGAAAGTTTGTATTTGCTGAAATGGCATTTTTCAGTAGATGGTGGGTGGAACAAACTCCACAAATACAAGCGCAGGTGACAAAGCTTGTGAATGCTGGCCAGCTAGAATTTGTAAATGGTGGTTGGTGCATGCATGATGAAGCAGCTACTCACTACGTAGACATGATTGATCAAACCACTCTGGGTCACCGCTTCATCAAAAACCAATTCAATAAGGTTCCTCGTGCAGGGTGGCAGATTGATCCCTTTGGACACTCTGCTGTTCAAGCTTACTTGCTTGGTGCTGAGCTTGGTTTTGACTCTGTGCACTTCGCTAGGATCGATTATCAGGACAGAGATAAACGCAAAGTTGATAAAACTCTTGAAGTTGTGTGGCGTGGCTCCAAGACATTTGGCTCTTCATCCCAGATTTTTGCCAACACTTTTCCTGTTCATTACGGTCCACCGAGAGGATTTCATTTTGAAGTCAATGATAACCTTGTTCCCGTACAGGATGACCCCCTTCTATTTGATTACAATGTCGATCAGCGAGTCCAGGACTTCGTCGCTGCTGCTATTACACAAGCAAATGTGACAAGGACGAACCATATCATGTGGACAATGGGCGATGATTTCCAGTACCAATATGCAGAGAATTGGTTCAGGCAAATGGATAAACTAATTCACCATGTTAACAAGGATGGCAGAGTGAATGCTTTATATTCTACCCCATCCATTTACACGGATGCAAAAAATGCTGCAAATCAACAATGGCCACTGAAAATTGATGATTACTACCCGTATGCAGATGAACCTCATGCTTATTGGACAGGCTTTTACACCAGTCGCCCAGCCTTTAAGCGATATGTTAGGATCCTCAGTGGATACTATTTGGCAGCACGCCAACTTGAATTTTTTGCCGGAAAGAAATCCACTACAAGCCACACTTTAGACCTTGGAGATGCTCTGGGCATTGCACAGCATCATGATGCTGTCTCTGGCACTGCCAAGCAACATACAACTGATGACTATGCAAAACGACTTGCGATTGGAGCCTCAAGGGTTGAGGATGTTGTTAGTTCCTCTTTGTATTGTCTTACTAGAACGAAATTAGGGGGTCAATGCACAACACCTACATCGGCATTTTCCCAGTGTCAATTACTCAACATCAGTTACTGTCCAGCAACAGAAGACAGTATTCCACAAGCGAATAGTTTGGTATTAGTGGTGTATAACACACTTGGATGGAATCGTACAGAGATTGTCAGAATTCCAGTTAATGATGCTAATCTTGTTGTCAAAGATTCATTGGGAAATAATGTTCAAACACAGTACATAGAAGTGGATAATGTTACAGCAAATTTGAGAGAAATCTACGTCAAAGCCTATCTTGGGGTGTCACCAAAACAAGCCCCCAAGTACTGGCTTGTGTTTCAGGCTTCGGTACCCCCACTTGGATGGAGTACGTATTTCATTTCTAAAATAGCAATGAGAGTTGAAAGCCGAAATGGATTTCTTTCACACCACACCACCAGTCAGAGAAACGACATCATTGAAGTAGGACCTGGAAATTTGAAATTGTCCTTTTCTGCAAAGTCTGGACAACTCATACGCATGCATAATTCCAGAACTGGAGTAGATGTACCAATTCAGCAAAGCTATCTCTGGTATAGTTCTTCGGTAAGTGTATGTCTGCTTTCTGGCGCATATATTTTTCAGCCCGATTCCCCTGCACATATTGTTTCAAAATCAGTAATGCCCATCAAGATAATCCGCGGACCATTAGTAGATGAGGTTCATCAGAATTTTAGTTCTTGGATTTACCAG 2076 0.4268 MSERMTIVSECFFVFLLLCLCGSVVCVKYNTGASIVPGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNNIQGACVENVLDSVVMSLQRDQNRKFVFAEMAFFSRWWVEQTPQIQAQVTKLVNAGQLEFVNGGWCMHDEAATHYVDMIDQTTLGHRFIKNQFNKVPRAGWQIDPFGHSAVQAYLLGAELGFDSVHFARIDYQDRDKRKVDKTLEVVWRGSKTFGSSSQIFANTFPVHYGPPRGFHFEVNDNLVPVQDDPLLFDYNVDQRVQDFVAAAITQANVTRTNHIMWTMGDDFQYQYAENWFRQMDKLIHHVNKDGRVNALYSTPSIYTDAKNAANQQWPLKIDDYYPYADEPHAYWTGFYTSRPAFKRYVRILSGYYLAARQLEFFAGKKSTTSHTLDLGDALGIAQHHDAVSGTAKQHTTDDYAKRLAIGASRVEDVVSSSLYCLTRTKLGGQCTTPTSAFSQCQLLNISYCPATEDSIPQANSLVLVVYNTLGWNRTEIVRIPVNDANLVVKDSLGNNVQTQYIEVDNVTANLREIYVKAYLGVSPKQAPKYWLVFQASVPPLGWSTYFISKIAMRVESRNGFLSHHTTSQRNDIIEVGPGNLKLSFSAKSGQLIRMHNSRTGVDVPIQQSYLWYSSSVSVCLLSGAYIFQPDSPAHIVSKSVMPIKIIRGPLVDEVHQNFSSWIYQ 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1108 692 PANTHER ALPHA-MANNOSIDASE 10 692 - -
Pvu2g1108 692 Pfam Glycosyl hydrolases family 38 C-terminal domain 605 690 IPR011682 GO:0004559|GO:0006013
Pvu2g1108 692 Gene3D - 577 692 - -
Pvu2g1108 692 Gene3D Glycoside hydrolase family 38, central domain 399 454 IPR037094 GO:0004559|GO:0006013
Pvu2g1108 692 SUPERFAMILY Families 57/38 glycoside transferase middle domain 356 451 IPR028995 -
Pvu2g1108 692 SMART Alpha_mann_mid_2 357 431 IPR015341 GO:0004559|GO:0006013
Pvu2g1108 692 Gene3D Glycoside hydrolase family 38, central domain 321 398 IPR037094 GO:0004559|GO:0006013
Pvu2g1108 692 Pfam Glycosyl hydrolases family 38 N-terminal domain 41 352 IPR000602 GO:0004559|GO:0006013
Pvu2g1108 692 SUPERFAMILY Glycoside hydrolase/deacetylase 29 355 IPR011330 GO:0005975
Pvu2g1108 692 Gene3D - 467 576 IPR013780 -
Pvu2g1108 692 PANTHER ALPHA-MANNOSIDASE 10 692 - -
Pvu2g1108 692 Gene3D Glycoside hydrolase 38, N terminal domain 40 320 IPR027291 -
Pvu2g1108 692 Pfam Alpha mannosidase middle domain 357 448 IPR015341 GO:0004559|GO:0006013
Pvu2g1108 692 CDD GH38N_AMII_LAM_like 40 316 - -
Pvu2g1108 692 SUPERFAMILY Galactose mutarotase-like 463 692 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1108 Pvu-Chr2 21663227 21668411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1108 10 692 Glycoside Hydrolase AT3G26720 59.565 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1108 K01191 - gmx:100806041 1208.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1108 2 21663227 21668411 Pvu2g1108 2 21663227 21668411 ECH
Pvu3g2721 3 49155738 49164507 Pvu2g1108 2 21663227 21668411 PCT