Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0536 ATGAAGATTTGGAGATGGTTGGTGAGTTTGTTTGTGGGGCTAGTGTTGCCTGTGTCAATAATGGGTCGATTCGTGGTGGAGAAGAACAGCCTGAGAGTGACGTCGCCGGAGAAAATAAGAGGCACTCACGACAGTGCCATCGGGAACTTCGGCATCCCTCAATACGGTGGTAGCATGGCGGGGAACGTCGTTTACCCAAAGGATAACAAGAAAGGTTGCAAAGAGTTTGAAGACTCTGGAATTTCCTTCAAATCAACCCCCGGTGCTCTTCCCACCTTTGTTCTGCTCGATCGTGGAAGTTGCTTCTTTGCATTGAAGGTTTGGAATGCCCAGAAGGCTGGAGCTTCTGCTGTTCTTGTTGCAGATGATGTTGAGGAGCCCTTAATAACTATGGACACGCCTGAAGAGGATGGTTCATCTGCTAAATATGTGGCGAACATAACTATACCGTCTGCTCTTGTTGGAAAAAGTTTTGGTGAAAAACTAAAGGATGCCATAAGTGGTGGGGACATGGTCAATGTAAATCTTGATTGGAGAGAGTCTGTCCCTCACCCAGATGATCGTGTGGAGTATGAGTTGTGGAGCAACAGCAATGATGAGTGTGGAGTTAAGTGTGATATGTTGATGGAATTTGTGAAGGATTTCAAGGGTGCTGCGCAGATACTCGAGAAAGGTGGTTACACTCTGTTTACACCCCATTATATAACTTGGTACTGTCCTCATGCTTTCACATTGAGCAAACAGTGCAAGTCTCAATGCATAAATCATGGAAGATATTGCGCTCCAGACCCTGAGCAGGACTTCAGCACAGGTTATGACGGGAAAGATGTGGTTATTGAAAATTTAAGACAGCTATGTGTTTTCAAGGTGGCAAATGAAAGTGGAAAGCCTTGGGTCTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCCATGAAGGAGAAAAAATACAATAAGGAATGTGCAGATGCTGTAATTAAATCACTGGGTCTTAATATTGAAAAGATTGGGAAATGCATGGGAGATCCAGATGCTGATACTGATAATCCTGTCTTGAAAGAAGAGCAAGATGCCCAAATTGGAAAGGGATCACGAGGTGATGTTACGATCTTGCCTACTCTTGTGGTCAATAATCGACAATATCGAGGAAAATTGGAGAAAGGGGCTGTTCTAAAGGCTGTATGTTCTGGCTTTGAGGAAACTACTGAACCAGCTGTTTGCCTGAGCACTGATATGGAGACAAATGAGTGCTTGGCAAACAATGGTGGTTGTTGGCAGGATAAAGCAGCTAACATCACTGCATGCAAGGATACATTCCGTGGGAGAGTATGTGAATGCCCCCTGGTGGATGGTGTCCAATTCAAGGGAGATGGTTATACTACTTGCGAAGCAAGAGGACTTGGGCGTTGCAAGATAAACAATGGAGGCTGTTGGCATGAGTCCCGGAATGGACATGCATTTTCTGCTTGTTTGGATAACGGAGGGGTCAAATGCCAGTGTCCCACAGGGTTTAAAGGTGATGGTGTCAAAAATTGTGAAGATATTGACGAATGCAAAGAGAAGAAGGCTTGTCAGTGCCCTGATTGTAGCTGCAAGAATACATGGGGCAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAGGGACCACGATACCTGCATAAGTAAAACTGGAAGTCAGGGAAGATCTACTTGGGCTGCATTTTGGCTGATTCTACTTGGCGTAGTTATGATTGCTGGTGGGGCATTCCTTGTGTACAAGTATAGAATAAGGCAATACATGGATTCCGAAATCAGAGCAATCATGGCACAATATATGCCCCTGGACAGCCAAGCAGAAGTTCCAAATCATGTCAATGATCAAAGAGCATGA 1881 0.4471 MKIWRWLVSLFVGLVLPVSIMGRFVVEKNSLRVTSPEKIRGTHDSAIGNFGIPQYGGSMAGNVVYPKDNKKGCKEFEDSGISFKSTPGALPTFVLLDRGSCFFALKVWNAQKAGASAVLVADDVEEPLITMDTPEEDGSSAKYVANITIPSALVGKSFGEKLKDAISGGDMVNVNLDWRESVPHPDDRVEYELWSNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYTLFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANESGKPWVWWDYVTDFQIRCPMKEKKYNKECADAVIKSLGLNIEKIGKCMGDPDADTDNPVLKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAVCSGFEETTEPAVCLSTDMETNECLANNGGCWQDKAANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEARGLGRCKINNGGCWHESRNGHAFSACLDNGGVKCQCPTGFKGDGVKNCEDIDECKEKKACQCPDCSCKNTWGSYDCSCSGDLLYMRDHDTCISKTGSQGRSTWAAFWLILLGVVMIAGGAFLVYKYRIRQYMDSEIRAIMAQYMPLDSQAEVPNHVNDQRA* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0536 626 Gene3D Laminin 408 464 - -
Pvu2g0536 626 Gene3D Laminin 520 557 - -
Pvu2g0536 626 Pfam PA domain 60 162 IPR003137 -
Pvu2g0536 626 SMART egfca_6 515 557 IPR001881 GO:0005509
Pvu2g0536 626 CDD PA_VSR 49 176 - -
Pvu2g0536 626 ProSitePatterns Calcium-binding EGF-like domain signature. 515 541 IPR018097 GO:0005509
Pvu2g0536 626 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 605 - -
Pvu2g0536 626 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 11 605 - -
Pvu2g0536 626 SUPERFAMILY PA domain 93 169 IPR046450 -
Pvu2g0536 626 Pfam Complement Clr-like EGF-like 498 518 IPR026823 -
Pvu2g0536 626 ProSitePatterns EGF-like domain signature 2. 499 513 IPR000742 -
Pvu2g0536 626 CDD EGF_CA 515 543 - -
Pvu2g0536 626 Gene3D Laminin 469 519 - -
Pvu2g0536 626 Gene3D - 21 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0536 Pvu-Chr2 4789398 4793847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0536 22 626 Miscellaneous Gene Families AT2G14740 85.455 0.0 1108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0536 - - gmx:100820115 1265.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0536 2 4789398 4793847 Pvu2g0536 2 4789398 4793847 ECH
Pvu2g0536 2 4789398 4793847 Pvu7g0460 7 3576541 3582443 PCT