Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2725 ATGGCTGCGATCGATGGATTCAACGCGCTTCAACACTTGTCGCTCCTCTCCAAGGTCTGCGCCGAGCTCGAATCCCACACCGGCGCCGCCGACAAGGTCCTCGCCGAGTTCATCATCCACTTGGCAAGCTCTTCCGACAACCTTAACCACTTCGTCGACAAACTCAAGGACAACGGTGCCCATTTTCCGGATTACCTTGTCCGAACGCTTTTCACCGTTGTTCATGCAGTTCTTACACCCTCTAAGACAGAGTCTGAAACCAGAGAAGAGGGCAGTGGCAGTTCTTCGTGGAGGCCTCACAAGAAGAGAATCTCTTCTCCGGAGAAACGGGAAGTAAAACAGTTCACTGCCGCCGGAAACTTGAATTTTCCAGATGATGAGGAGGAGGAGGAGGGAGATGGATTGCTACACCAAGAAGAAGGTGACGATGAGGATCTTGAGATTGAGTTGAATGATGATGCACCTGCTTTCTTGCAGGGGAAAAAAACCAAACACTCAATGGACATGTCTCCTCTTAAGATTTTCACGAATCCAGAAGGTTCTCTGCTTCGCAGCGCGGCGATTCAGTCTGCGCTTGCTAAGGAACGAAGGGAAGTGCGAGAACAGCTGCATCGTTCAATGCTGGATTCAATTCCAAAGGATCTGAATCGCCCTTGGGAAGATCCTATGCCGGAGAAAGGTGAAAGACACCTTGCTTACGAGCTTAGGGGGGTGGGTTTATCTGCCTTTGACATGCCGGAGTGGAAGGAGAACTGCGAAAAAACCATTTCGTTTGGGCCGAAATCAAAGTTTTCTATTCCGGAGCAGAGGCAGAGTTTGCCAATTTATAAACTGAAAAATGAATTGATTCAGGCTGTGCATGATAATCAGGTGTTGGTGGTGATCGGAGAAACTGGTTCTGGGAAGACTACTCAGCTTACCCAGTATCTTGCCGAAGCGGGGTACACCACAAAGGGGAAAATTGGGTGTACTCAACCACGGAGAGCCGCTGCAGTGTCTGTTGCAAAGAGGGTTGCAGAAGAGTTCGGTTGTCGATTGGGGGAGGAAGTTGGTTTCGCCATTCGGTTTGAGGATTGCACTGGATCGGATACTGTCATCAAGTACATGACTGATGGTATGCTTCTTAGGGAGATGTTGGTGGATGAGAATCTGTCACGGTATTCAGTTATTATGCTTGATGAAGCCCATGAAAGAACTGTTTATACTGATGTTCTTTTTGGACTTCTGAAGCTGCTACTGAAGATTAGGCCTGAATTAAGATTGATCGTCACGTCTGCTACTCTTGATGCTGAGAAGTTTTCAGGGTATTTCTTTGACTGTAACATCTTTACAATACCTGGGAGAACTTTTCCTGTGGAGATACTTTATGCTAAACAGCCTGAGAGTGATTACTTGGATTCATCTTTGCTCACTGTTTTGCAGATCCACTTGACAGAATCTAAAGGAGACATTCTTCTCTTCTTAACTGGCCAAGAAGAGATTGATTTTGCATGCCAATCTCTTTTTGAGAGAATGAAGGGATTGGGTAAGAATGTTCCAGAGCTCATCATTTTACCTGTTTATAGTGCTCTTCCTAGTGAAATGCAGTCTAGGATATTTGAACCTACTCCACCTGGGAAAAGGAAAGTGGTTGTGGCTACAAACATTGCTGAAGCTTCTTTGACCATTGATGGTTTATCTTATGTAGTTGATCCTGGATTTGCCAAGCAGAATGTTTATAACCCGAAGCAAGGCCTTGATTCTTTGGTGATAACTCCAATTTCACAAGCATCAGCCAAACAAAGAGCAGGGCGTGCAGGGCGTACAGGACCTGGGAAGTGTTATCGTCTATATACTGAGAGTGCATATAGGAATGAGATGTCTCCCACTACAGTTCCAGAGATTCAAAGGATAAACCTAGCAACAACTACTCTTAATATGAAAGCTATGGGGATAACCGATCTATTGGCCTTTGATTTTATGGATTCACCTTCACCTCAGGCGCTTGTTTCTGCTATGGAGCAGCTTTACAGTCTTGGAGCATTGGATGAAGAGGGCCTGTTAACCAAACTAGGGAGGAAAATGGCAGAATTTCCTTTGGATCCACCTTTGTCCAAGATGCTACTTGCCAGTGTGGATCTTGGATGCAGTGATGAGATTTTGACCATAATTGCCATGATCCAAACCGGAAATATTTTTTACAGGCCAAGGGAAAAGCAAGGCCAAGCAGATCAGAAGAGGGCAAAGTTTTTACAGCCAGAGGGTGACCATCTTACTCTACTTGCTGTTTATGAAGCTTGGAAAGCTAAGAATTTTTCAGGGCCGTGGTGTTCTGAGAACTTTGTTCAATCCCGATCGTTGAGAAGAGTGCAGGATGTTAGAAAACAGCTTCTCACCATCATGGATAGGTACAAATTAGATGTTGCGAGTGCTGGAAATAAGTTAACCAAAGTCACGAAGGCTATTGCTGCAGGATTCTTTTTCCATGCTGCTAGAAAGGACCCTCAGGAAGGTTACAGAACCCTGGTTAACAACCAGTGTGTATATATCCATCCAAGCTCAGCTTTGTTCCAGAGACAACCAGACTGGGTAATCTACCACGAGCTTGTGATGACAACGAAGGAATATATGCGTGAGGTCACTGCCATAGACCCTAAATGGCTAGTTCAACTGGCTCCAAGATTTTTCAAAGCTGTAGATCCCACAAAGACGAGCAAGCGAAAGCGTCAAGAACGTATACAACCACTTTATGGCTTCTGA 2739 0.4535 MAAIDGFNALQHLSLLSKVCAELESHTGAADKVLAEFIIHLASSSDNLNHFVDKLKDNGAHFPDYLVRTLFTVVHAVLTPSKTESETREEGSGSSSWRPHKKRISSPEKREVKQFTAAGNLNFPDDEEEEEGDGLLHQEEGDDEDLEIELNDDAPAFLQGKKTKHSMDMSPLKIFTNPEGSLLRSAAIQSALAKERREVREQLHRSMLDSIPKDLNRPWEDPMPEKGERHLAYELRGVGLSAFDMPEWKENCEKTISFGPKSKFSIPEQRQSLPIYKLKNELIQAVHDNQVLVVIGETGSGKTTQLTQYLAEAGYTTKGKIGCTQPRRAAAVSVAKRVAEEFGCRLGEEVGFAIRFEDCTGSDTVIKYMTDGMLLREMLVDENLSRYSVIMLDEAHERTVYTDVLFGLLKLLLKIRPELRLIVTSATLDAEKFSGYFFDCNIFTIPGRTFPVEILYAKQPESDYLDSSLLTVLQIHLTESKGDILLFLTGQEEIDFACQSLFERMKGLGKNVPELIILPVYSALPSEMQSRIFEPTPPGKRKVVVATNIAEASLTIDGLSYVVDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTVPEIQRINLATTTLNMKAMGITDLLAFDFMDSPSPQALVSAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQGQADQKRAKFLQPEGDHLTLLAVYEAWKAKNFSGPWCSENFVQSRSLRRVQDVRKQLLTIMDRYKLDVASAGNKLTKVTKAIAAGFFFHAARKDPQEGYRTLVNNQCVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTAIDPKWLVQLAPRFFKAVDPTKTSKRKRQERIQPLYGF* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2725 912 Gene3D - 247 448 IPR027417 -
Pvu1g2725 912 Gene3D - 449 623 IPR027417 -
Pvu1g2725 912 Pfam Helicase associated domain (HA2) 665 753 IPR007502 GO:0004386
Pvu1g2725 912 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 471 644 IPR001650 -
Pvu1g2725 912 SMART ha2_5 664 754 IPR007502 GO:0004386
Pvu1g2725 912 SMART helicmild6 503 603 IPR001650 -
Pvu1g2725 912 PANTHER ATP-DEPENDENT RNA HELICASE 97 910 - -
Pvu1g2725 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 283 446 IPR014001 -
Pvu1g2725 912 MobiDBLite consensus disorder prediction 81 135 - -
Pvu1g2725 912 Pfam DEAD/DEAH box helicase 280 429 IPR011545 GO:0003676|GO:0005524
Pvu1g2725 912 SMART ultradead3 271 455 IPR014001 -
Pvu1g2725 912 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 388 397 IPR002464 -
Pvu1g2725 912 MobiDBLite consensus disorder prediction 82 110 - -
Pvu1g2725 912 CDD SF2_C_RHA 450 611 - -
Pvu1g2725 912 Pfam Helicase conserved C-terminal domain 472 603 IPR001650 -
Pvu1g2725 912 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 812 886 IPR011709 -
Pvu1g2725 912 PANTHER - 97 910 - -
Pvu1g2725 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 796 IPR027417 -
Pvu1g2725 912 Gene3D - 648 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2725 Pvu-Chr1 51780288 51783180 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2725 K12818 - gmx:100815173 1424.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1719 2 30934887 30937288 Pvu1g2725 1 51780288 51783180 PCT