Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2708 ATGATGAAGCGGCAGAGCAGAGGGGAGGTGGTGGTGGTGGCGATGGTGGTGGCGATGGCATGGTGTGGGTGGATGACGGCGGCGGAAGGCGCGGATGATTTGTCGACGAAGTGCGCGGAGGTGGTTCAGAAGGTTATTCCGTGCTTGGATTTCGCGTCGGGGAAGGAAGCGGCGCCGAAGAAGGAGTGCTGCGACGCGACGGCGAGCATAAAGGAGAGCAACCCAGAGTGTCTGTGCTTCGTCATTCAGCAGACGCACAAGGGTAGCCCTCAGATAAAAAGCTTGGGCATTCAAGAGGACAAGTTGCTTCAGCTTCCTTCGCTCTGTAAAGTAAAAAACGCCACCATCACCGATTGTCCCAAGCTTCTGGGTCTATCTCCAAGTTCCCCTGATGCTGCAATCTTCACAAATTCTTCCAAAGTAACTCCTGCAACATCAAGCACACAAAGTACGACCCCACAGAGCCAAAATGCTTCGTATGGAAGTGCTGTTGTACCTAGTATGCTGCTCATGACTTTGACCATTGTTGTGGCTGCAATTTCACCTGTTTTTGTGAGCATTTATACGTGA 570 0.5211 MMKRQSRGEVVVVAMVVAMAWCGWMTAAEGADDLSTKCAEVVQKVIPCLDFASGKEAAPKKECCDATASIKESNPECLCFVIQQTHKGSPQIKSLGIQEDKLLQLPSLCKVKNATITDCPKLLGLSPSSPDAAIFTNSSKVTPATSSTQSTTPQSQNASYGSAVVPSMLLMTLTIVVAAISPVFVSIYT* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2708 189 Pfam Probable lipid transfer 22 119 IPR016140 -
Pvu1g2708 189 CDD AAI_LTSS 47 111 - -
Pvu1g2708 189 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 37 119 IPR036312 -
Pvu1g2708 189 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN GPI-ANCHORED 1 12 169 - -
Pvu1g2708 189 Gene3D - 35 116 IPR036312 -
Pvu1g2708 189 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 12 169 IPR043325 -
Pvu1g2708 189 SMART aai_6 38 119 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2708 Pvu-Chr1 51677293 51680383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2708 37 177 Acyl Lipid Metabolism Gene Families AT1G27950 51.333 2.84e-47 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2708 - - gmx:100499777 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2708 1 51677293 51680383 Pvu2g1783 2 32212999 32215673 PCT