Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2702 ATGCCCTTCACTTCCAAAAGACGAAAAACATGTCCGGAGAAAACCTCCGACTTCTTCGAATCTTTGCCGGACGATCTTCTTCTCTCTATCCTCTGCAAGCTCAGTGCCACAGCATCTTCACCCTCCGATTTTATCAATGTCTTAGTAACGTGCAAGAGACTAAACTCTCTGGGCCTTCACTCTCTCGTGTTGTCCAAAGCATCCCATAAAACATTCTTGGTCAAACCTCAAAATTGGTGTGATTCTGTTCACCGTTTCCTCAAACACTGTGCCGACGCCGGAAACATTGAAGCCTGTTACACCCTTGGCATGATTCGGTTTTATTGTCTGCAAAACAGAGGGAGCGGCGCGTCGCTGATGGCGAAGGCGGCGATGAACTCTCACGCGCCGGCGTTGTATTCTCTCGCCGTTATACAGTTCAACGGAAGCGGTGGCACGAAAAACGACAAGGACCTTCGGGCCGGAGTGGCGCTGTGCGCACGCGCGGCTTTTCTGGGTCATGTCGACGCGCTGCGTGAGCTTGGTCATTGCTTGCAAGACGGTTACGGCGTTAAGCAGAACGTGGCAGAAGGTCGACGTTTTTTGTTGCAAGCCAACGCGCGAGAACTCGCCGCCGTGCTCTCCACCGTGGGTAATAAGCGTCCCTGGGTGACGTGGAACCTCCCGGTTCCGCACCCGCGACTCCGTTTGGGAACCGGGTCGGGTTGTCCTTTGTTGAGTGATTACGGTTGCAACGTGCCGGCGTCGGAGACTCATCCGGCGAGTAAGTTTTTATCGGAGTGGTTTGTTATTCGGAGCGGGTCGCTTGGGTCGGGTATGAGACTGTGTTCACATTCGGGTTGCGGGCGACCCGAGACGAGGAGACACGAGTTTCGAAGGTGTTCGGTGTGCGGTGTAGTGAATTATTGCTCACGCGCGTGTCAGGCGCTTGACTGGAAATTCCGGCACAAGGCGGAATGTGCCCCCGTTGAGAGGTGGCTCAATGACGACGGGGAAGATGTCGCCGCCGGCGAGAATGGCGACGGTGACGACGAAATCATGGCAAATAGTTAG 1053 0.547 MPFTSKRRKTCPEKTSDFFESLPDDLLLSILCKLSATASSPSDFINVLVTCKRLNSLGLHSLVLSKASHKTFLVKPQNWCDSVHRFLKHCADAGNIEACYTLGMIRFYCLQNRGSGASLMAKAAMNSHAPALYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVKQNVAEGRRFLLQANARELAAVLSTVGNKRPWVTWNLPVPHPRLRLGTGSGCPLLSDYGCNVPASETHPASKFLSEWFVIRSGSLGSGMRLCSHSGCGRPETRRHEFRRCSVCGVVNYCSRACQALDWKFRHKAECAPVERWLNDDGEDVAAGENGDGDDEIMANS* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2702 350 SUPERFAMILY HIT/MYND zinc finger-like 275 325 - -
Pvu1g2702 350 PANTHER MYND DOMAIN-CONTAINING 5 347 IPR044508 -
Pvu1g2702 350 Pfam MYND finger 281 320 IPR002893 -
Pvu1g2702 350 Gene3D - 269 324 - -
Pvu1g2702 350 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 5 347 - -
Pvu1g2702 350 MobiDBLite consensus disorder prediction 331 350 - -
Pvu1g2702 350 SUPERFAMILY F-box domain 8 77 IPR036047 GO:0005515
Pvu1g2702 350 SUPERFAMILY HCP-like 85 200 - -
Pvu1g2702 350 Gene3D Tetratricopeptide repeat domain 80 212 IPR011990 GO:0005515
Pvu1g2702 350 ProSiteProfiles Zinc finger MYND-type profile. 278 320 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2702 Pvu-Chr1 51637374 51638914 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2702 - - gmx:100798136 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2702 1 51637374 51638914 Pvu2g1786 2 32264391 32266185 PCT