Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2654 ATGAGCTCTCCAATGGCAGCAACCATGGCCATAGTAAACACCAAGACCCTAAACCTTCAACTCCCACCATCAAAACCCATCCTTTCTCTCTTTTCCCATCTCAACTTTCCAAAGGGTCCAACCTCCACCATTAACGCCACCGTTTCAGCAACAACATCTTCCATGGCGGGCACTGCAATCGCGGGGGCAGTTTTTTCCACCCTCGGATGCTGCGATGCGGCTTTTGCGGGGTCGCAAATAGCCCAAATAGCGGAGGGCGACAACAGTGGGCTTGCGCTGTTGCTGCCGGTGGCCCCCGCCTTAGCGTGGGTGCTGTTCAACATTCTGCAGCCGGCGCTGAACCAGCTGAACCGCATGCGGAGCAGCAAGGGGGTCATGGTTGGGCTTGGGCTTGGGCTCGGCGCATCGGGCTTGGTGTGGGGCCCGGAAGCGTCGGCGAGTGAGATGGGTCTGATTGCAGATGCTGCGGCAGGCGGTGACAACAGGGGTCAGCTTCTGCTGTTTGTGGTTGCACCGGCGATTGTGTGGGTTCTGTACAACATTCTGCAACCTGCACTTAATCAGCTTAACAGAATGAGATCAAAATGA 588 0.5629 MSSPMAATMAIVNTKTLNLQLPPSKPILSLFSHLNFPKGPTSTINATVSATTSSMAGTAIAGAVFSTLGCCDAAFAGSQIAQIAEGDNSGLALLLPVAPALAWVLFNILQPALNQLNRMRSSKGVMVGLGLGLGASGLVWGPEASASEMGLIADAAAGGDNRGQLLLFVVAPAIVWVLYNILQPALNQLNRMRSK* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2654 195 PANTHER - 6 194 - -
Pvu1g2654 195 Pfam Photosystem II protein Y (PsbY) 90 119 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Pvu1g2654 195 Pfam Photosystem II protein Y (PsbY) 160 192 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Pvu1g2654 195 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 6 194 IPR038760 GO:0009523
Pvu1g2654 195 Hamap Photosystem II protein Y [psbY]. 87 121 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2654 Pvu-Chr1 51333848 51334501 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2654 K02723 - gmx:100814665 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2654 1 51333848 51334501 Pvu1g2654 1 51333848 51334501 ECH
Pvu2g2611 2 42013446 42014685 Pvu1g2654 1 51333848 51334501 PCT