Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2638 ATGAAGTGTTTCTCCTTATCCTCCATCTCCCTTTTTATCTTCCTTTCTCTATGTTTTGAGAGTGTGTGGACTCAAAATGTATCCGAGAGTGGCCGACAGGAAGCTAGCATTCCACCAAGAGGTTGGAACTCCTATGATTCCTTTTCCTGGACAATATCTGAAGAAGAGTTCTTACAGAGTGCTGGAATAGTTTCTCAGCGTCTCCATGGTCATGGATATGAGTATGTTGTGGTGGATTACCTCTGGTATAGAAGGAAAGTTGAGGGTGCTTATCATGATTCTCTTGGATTTGATGTGATTGATGAATGGGGGAGGATGCTTCCTGATCCAGGAAGGTGGCCTTCTTCTGAAAATGGGAAAGGATTTGCTGAAGTAGCTAATCAAGTACATGGAATGGGTTTAAAATTTGGGATTCATGTCATGAGAGGGATTAGCACACAAGCTGTAAACGCGAACACCCCTATCCTTGATACAAAAACGGGAGGTGCTTATCAAGAATCTGGTCGAGTGTGGTATGCAAGAGACATAGCAATCCCAGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTGAATACAAAGCTGGGAGCAGGGAAAGCTTTTCTGAGATCCCTTTATGAGCAGTATGCTTCATGGGATGTTGATTTTGTAAAACATGACTGTGTATTCGGGGATGACTTTGATTTAAATGAAATAAGCTATGTGTCAGAGGTTCTCAAGGAGTTTGATCGCCCCATTGTATATTCTTTGTCTCCAGGAACTAGTGTGACACCAGCCATGGCCAAGGATGTCATTGGACTGGTCAATATGTATCGTATAACAGGAGATGACTGGGATACATGGAAGGATGTCAAATCACATTTTGATATTGCAAGGGATTTCTCAAATGCTAATATGATAGGAAATAAAGGTTTAATGGGGAAATCCTGGCCTGATTTGGACATGCTACCCTTTGGATGGCTAACTGATCCTGGTTCAAATGAAGGTCCACATAGGTTTAGTTACCTCAATCCGGAAGAAAAGAAGACGCAGATGACTCTTTGGTCTATGGCAAAGTCTCCCCTTATGTATGGTGGGGATGTTCGGAAGATTGATCCTACCACATATGATATTATCACAAATCCTACCCTTCTCGAGATTAATTCTTTTAGCTCAAATAATATGGAGTTTCCTTTTATCACAAGTGTGAAGAGTGAAGATCAGGATCTTAGTATGAGAAGAAGTGCCAAAGAAATAAAAACAACTTTCAGGCATTCATTAGGCCTCACAAGGTGCACCGAGTCAAAGGCAAGGGGTTGGGCTAGTGAAAGCCTTAACCAATATCTTGAAAGAATATGCTGGAAAAGGAGTTTAGGAAACAAGCATCTTGCCCCTTTCTGTGTGCACAAAAGAGAACTTTACTTCCCATTAGATGAAGTGAGTATGTATCAAGGGAAACATCATTTAGTTGCACCAAGCAGAATAAAATTTTGCTTGGATGCTTCTCCGAAACGCAAGCTCACTTCTAAAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGGTGGGATTCAAATCAGATGTGGGAATTGAATCCTAATGGGACCCTGGTCAATAGTTATTCTGGTTTGTGTGCAACAGTGGAGTCTAGCGAAGATACTATTAATTCTGGTGGCTTGCGCTCGTGGATTGGGACAGGAAGAAAAGGAGAAGTCTATATTGCTTTCTTCAATCTAAGTGAACAGAAGACGGTGATATCTGCACAGGCATCTGATCTGGCTAAGTTCCTTCCTGGCAGAGACTTGAGTTCTTGTGAGGGCAGTGAAGTGTGGAGTGGAGATGCTGTAGAAATAACTGAAGGGACTTTATCACAAACAGTGGAAATGCATGGAAGTGCACTGATTGTTCTGAATTGCAACTAG 1905 0.421 MKCFSLSSISLFIFLSLCFESVWTQNVSESGRQEASIPPRGWNSYDSFSWTISEEEFLQSAGIVSQRLHGHGYEYVVVDYLWYRRKVEGAYHDSLGFDVIDEWGRMLPDPGRWPSSENGKGFAEVANQVHGMGLKFGIHVMRGISTQAVNANTPILDTKTGGAYQESGRVWYARDIAIPERACAWMPHGFMSVNTKLGAGKAFLRSLYEQYASWDVDFVKHDCVFGDDFDLNEISYVSEVLKEFDRPIVYSLSPGTSVTPAMAKDVIGLVNMYRITGDDWDTWKDVKSHFDIARDFSNANMIGNKGLMGKSWPDLDMLPFGWLTDPGSNEGPHRFSYLNPEEKKTQMTLWSMAKSPLMYGGDVRKIDPTTYDIITNPTLLEINSFSSNNMEFPFITSVKSEDQDLSMRRSAKEIKTTFRHSLGLTRCTESKARGWASESLNQYLERICWKRSLGNKHLAPFCVHKRELYFPLDEVSMYQGKHHLVAPSRIKFCLDASPKRKLTSKEFKRGTFSPCRWDSNQMWELNPNGTLVNSYSGLCATVESSEDTINSGGLRSWIGTGRKGEVYIAFFNLSEQKTVISAQASDLAKFLPGRDLSSCEGSEVWSGDAVEITEGTLSQTVEMHGSALIVLNCN* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2638 634 Gene3D - 546 633 IPR013780 -
Pvu1g2638 634 CDD GH27 38 383 IPR002241 GO:0004553|GO:0005975
Pvu1g2638 634 PRINTS Glycosyl hydrolase family 27 signature 32 51 IPR002241 GO:0004553|GO:0005975
Pvu1g2638 634 PRINTS Glycosyl hydrolase family 27 signature 126 147 IPR002241 GO:0004553|GO:0005975
Pvu1g2638 634 PRINTS Glycosyl hydrolase family 27 signature 341 362 IPR002241 GO:0004553|GO:0005975
Pvu1g2638 634 CDD RICIN 518 547 IPR000772 -
Pvu1g2638 634 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 3 631 IPR002241 GO:0004553|GO:0005975
Pvu1g2638 634 SUPERFAMILY Ricin B-like lectins 491 551 IPR035992 -
Pvu1g2638 634 SUPERFAMILY Glycosyl hydrolase domain 550 631 - -
Pvu1g2638 634 Pfam Alpha galactosidase C-terminal beta sandwich domain 552 631 IPR041233 -
Pvu1g2638 634 PANTHER ALPHA-GALACTOSIDASE 3 631 - -
Pvu1g2638 634 Pfam Alpha galactosidase A 209 383 IPR002241 GO:0004553|GO:0005975
Pvu1g2638 634 SUPERFAMILY (Trans)glycosidases 35 383 IPR017853 -
Pvu1g2638 634 Gene3D Aldolase class I 16 385 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2638 Pvu-Chr1 51212464 51218348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2638 2 467 Glycoside Hydrolase AT3G26380 66.311 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2638 - - gmx:100777954 1175.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2667 2 42515594 42521471 Pvu1g2638 1 51212464 51218348 PCT