Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2550 ATGGAACCTATTCTCCACTCCATCTTCTTAGCCATTTTCCTTCTCTTCACTTCACCATTCATGTCTTCAGCATATGCCAAAATTCACGCGCATGAGTTTCTTGTTGAAGCAACTCCAGTGAAGAGGCTGTGCAAAACACACAATGCCATCACTGTGAATGGCCAATTCCCCGGCCCAACCTTGGAAATCAACAATGGAGACACTTTAGTCGTCAAAGTCACCAACAAAGCTCGTTACAATGTCACAATTCATTGGCACGGTGTTAGGCAAATGAGAACAGGATGGGCAGATGGACCAGAATTTGTGACTCAGTGCCCCATTCGTCCTGGAGGAAGTTACACCTACCGTTTTACTGTTCAAGGACAAGAAGGCACACTTTGGTGGCACGCTCATAGCTCATGGCTGAGAGCCACCGTTTATGGTGCTTTAATCATTCGCCCTAGGGAAGGAGAACTCTACCCTTTCCCCAAGCCAAACCACGAGACACCCATTCTTCTTGGGGAATGGTGGGACGCAAACCCTATTGATGTGGTGAGGGAGGCTAGAAGAACTGGAGGAGCTCCTAACGTGTCTGATGCTTACACCATCAATGGTCAACCTGGTGATCTTTACAAGTGCTCTACCAAAGATACTAGCATTGTTCCAATTCATGGTGGAGAAACAAACCTTCTACGTGTCATCAATGCTGCACTCAATCAGCCTCTCTTCTTTACCGTCGCAAACCACAAACTTACGGTGGTTGGCGCCGATGCCTCCTACCTCAAACCCTTCACCACCAAAGTCCTCATGTTGGGACCCGGCCAAACCACCGATGTCCTCATTACCGGCGACCAACCACCATCTCGCTACTACATGGCGGCGCGTGCATACCAATCTGCTCAAAACGCTGCGTTTGACAACACCACCACCACCGCAATATTGGAATACAAATCACTTCACCATGGCAACCATTCTAAACATCATCATTCTAAAGGTGTGAAGAACAAAACGAAACCCATAATGCCTCCACTCCCTGCTTACAACGACACAAACACCGTCACTGCTTTCAGCAAAAGCTTCAGAAGCCCCAGAAAAGTGGAGGTCCCCGCTGAAATCGATCAAAGCCTTTTCTTCACTGTGGGCTTAGGACTCAACAAGTGCCCCAAAAACTTCAAAGCAAATAGGTGTCAGGGACCCAATGGGACGAGGTTCACTGCAAGCATGAACAACGTGTCTTTCGTGCTCCCCAACAACGTTTCTATCTTGCAGGCTCACTACCACAGAACCCCGGGAGTGTTCACCACCGATTTTCCGGGGAAGCCGCCGGTGAAGTTCGACTACACCGGCAACGTGAGCCGTTCGTTGTGGCAACCTATTCCTGGGACTAAGGCTCACAAGTTGAAGTTCGGGTCAAGGGTTGAGATTGTGTTGCAGGATACTAGCATTGTTACTCCTGAGAACCACCCTATCCATCTTCATGGCTATGATTTCTACATTGTTGCAGAGGGGTTCGGCAACTTCGACCCCAAGAAAGATAGGGCCAAATTCAACCTTGTTGATCCTCCTTTGAGGAACACAGTGGCTGTGCCTGTAAATGGATGGGCAGTTATTCGATTTGTTGCTGATAATCCAGGTGCGTGGCTTATGCACTGTCACTTGGACGTCCACATAGGGTGGGGTTTGGCGACGGTGTTGTTAGTGGAGAACGGTGTTGGGAAATTGCAATCCATAGAGCCTCCTCCACTGGATCTGCCTCTTTGTTAG 1743 0.4888 MEPILHSIFLAIFLLFTSPFMSSAYAKIHAHEFLVEATPVKRLCKTHNAITVNGQFPGPTLEINNGDTLVVKVTNKARYNVTIHWHGVRQMRTGWADGPEFVTQCPIRPGGSYTYRFTVQGQEGTLWWHAHSSWLRATVYGALIIRPREGELYPFPKPNHETPILLGEWWDANPIDVVREARRTGGAPNVSDAYTINGQPGDLYKCSTKDTSIVPIHGGETNLLRVINAALNQPLFFTVANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLITGDQPPSRYYMAARAYQSAQNAAFDNTTTTAILEYKSLHHGNHSKHHHSKGVKNKTKPIMPPLPAYNDTNTVTAFSKSFRSPRKVEVPAEIDQSLFFTVGLGLNKCPKNFKANRCQGPNGTRFTASMNNVSFVLPNNVSILQAHYHRTPGVFTTDFPGKPPVKFDYTGNVSRSLWQPIPGTKAHKLKFGSRVEIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDPKKDRAKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWLMHCHLDVHIGWGLATVLLVENGVGKLQSIEPPPLDLPLC* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2550 580 CDD CuRO_3_LCC_plant 425 563 IPR034289 GO:0005507
Pvu1g2550 580 ProSitePatterns Multicopper oxidases signature 1. 538 558 IPR033138 -
Pvu1g2550 580 PANTHER LACCASE 5 580 - -
Pvu1g2550 580 Pfam Multicopper oxidase 161 310 IPR001117 -
Pvu1g2550 580 Gene3D - 159 358 IPR008972 -
Pvu1g2550 580 CDD CuRO_1_LCC_plant 31 147 IPR034288 GO:0005507
Pvu1g2550 580 TIGRFAM laccase: laccase 26 580 IPR017761 GO:0046274|GO:0048046|GO:0052716
Pvu1g2550 580 CDD CuRO_2_LCC_plant 163 309 IPR034285 -
Pvu1g2550 580 ProSitePatterns Multicopper oxidases signature 2. 543 554 IPR002355 GO:0005507
Pvu1g2550 580 Gene3D - 378 580 IPR008972 -
Pvu1g2550 580 SUPERFAMILY Cupredoxins 27 174 IPR008972 -
Pvu1g2550 580 Gene3D - 31 154 IPR008972 -
Pvu1g2550 580 Pfam Multicopper oxidase 35 149 IPR011707 GO:0005507
Pvu1g2550 580 PANTHER MULTI-COPPER OXIDASE 5 580 IPR045087 -
Pvu1g2550 580 SUPERFAMILY Cupredoxins 361 580 IPR008972 -
Pvu1g2550 580 Pfam Multicopper oxidase 430 562 IPR011706 GO:0005507|GO:0016491
Pvu1g2550 580 SUPERFAMILY Cupredoxins 155 356 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2550 Pvu-Chr1 50563497 50567102 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2550 K05909 - gmx:547704 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2550 1 50563497 50567102 Pvu8g2280 8 53276921 53280333 PCT