Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2437 ATGGCAGAGCCAGAAATCAGCAACAGTAAGAGAGGAGGAAGATGGTCTCTCAGTGGAATGACGGCTCTTGTCACCGGCGGCACCCGTGGGATCGGGCACGCCATAGTGAGTGACTTGGCCGCGTTTGGCGCGGCTGTGCACACTTGTTCGAGGACCCAAACAGAGCTCAACAAGTGCTTAGAAGAGTGGCAAAATCTGGGATTTAAGGTTACTGGATCGGTGTGTGACGTGTCCTCGCCGCCTCAGAGAGAGAATCTTATTCAGGAAGTAGCATCCACCTTCAATGGCAGGCTTAACATCTATGTGAACAACGTTGGAATAAACTTTAGAAAGCCAACAATTGAGTACAGTACTGACGAATACTCACAGCTGATGGCAGTTAATTTAGACTCCTCATTCCATCTGTGCCAACTTGCATATCCTCTTCTGAAAGCATCTGGAAAGGGAAGCATTGTGTTCATTTCGTCGGTTGCTGGTGTGGTCAGCTTGGGTACTGGAGCTGTCTATGCAGCAAGTAAAGCCGCAATTAATCAGCTTACAAAAAATCTGGCATGTGAATGGGCAAAAGACAACATAAGGAGCAACTGTGTTGTACCGTGGGCTACTAGAACCTCGCTTGTAGAACATTTGTTGAAAGACCTAAAGTTTGTGGATGAAATTTTGTCCCGTACTCCAATTAAGCGTATAGCAGAACCTGAAGAAGTGTCTTCCTTGGTGACTTTCCTTTGCTTGCCTGGTGCTTCTTACATCACTGGACAAGTTATATGTGTTGATGGAGGATTAACAGTAAATGGATTTCAACCCAGCATAAGAATTACCTGA 822 0.4599 MAEPEISNSKRGGRWSLSGMTALVTGGTRGIGHAIVSDLAAFGAAVHTCSRTQTELNKCLEEWQNLGFKVTGSVCDVSSPPQRENLIQEVASTFNGRLNIYVNNVGINFRKPTIEYSTDEYSQLMAVNLDSSFHLCQLAYPLLKASGKGSIVFISSVAGVVSLGTGAVYAASKAAINQLTKNLACEWAKDNIRSNCVVPWATRTSLVEHLLKDLKFVDEILSRTPIKRIAEPEEVSSLVTFLCLPGASYITGQVICVDGGLTVNGFQPSIRIT* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2437 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Pvu1g2437 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Pvu1g2437 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 IPR002347 -
Pvu1g2437 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 19 264 IPR036291 -
Pvu1g2437 273 Gene3D - 11 265 - -
Pvu1g2437 273 Pfam Enoyl-(Acyl carrier protein) reductase 28 262 - -
Pvu1g2437 273 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 5 270 - -
Pvu1g2437 273 PANTHER TROPINONE REDUCTASE 5 270 IPR045000 GO:0016491
Pvu1g2437 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 156 184 IPR020904 GO:0016491
Pvu1g2437 273 PRINTS Glucose/ribitol dehydrogenase family signature 21 38 IPR002347 -
Pvu1g2437 273 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
Pvu1g2437 273 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Pvu1g2437 273 PRINTS Glucose/ribitol dehydrogenase family signature 169 188 IPR002347 -
Pvu1g2437 273 PRINTS Glucose/ribitol dehydrogenase family signature 190 207 IPR002347 -
Pvu1g2437 273 PRINTS Glucose/ribitol dehydrogenase family signature 225 245 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2437 Pvu-Chr1 49620858 49624888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2437 14 268 Miscellaneous Gene Families AT2G29290 61.479 9.28e-116 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2437 K08081 - gmx:100527615 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2437 1 49620858 49624888 Pvu1g2427 1 49560384 49561374 ECH
Pvu1g2437 1 49620858 49624888 Pvu1g2437 1 49620858 49624888 ECH