Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2343 ATGAAGACGGGCTCCATGATTTTTTCATTGTTATATCTACCTAGATGTAGAATACAAAGATTAGCTAATTACTGGGGAGAAACTTTCCACAGTTTCAGTTCGACTTGTGGAAACAATTCTAGCACCAGGTCGCTTAGTTATAGAATTTATGGTCTTCAGGGAGGACAGAGAAAGAAGTGGACAAGACCTATAACTACAAATACAGAAGGCAAGGGGAACACCAAATCAAAAAGTATCAAGCATGAAATCTTGAGTGAAACCATTATAGAAGGTGCTACAGTAGATGTAAATAAAACACAGCTAGATCAATTCCAGGAAATTCAGTACCGTGACATACAAAAAGAGATTGCCCAGAATAAAGACTTGTCTAGTTTATTTACTATTATCGTTTTTGATATCGAGACCACAGGGCTTAGCAGAGAGAAAGAAAGGATCATTGAAATTGCATTTCGAGATCTTGAGGGTGGTGAGAACAGCACTTTTCAGACTCTTATCAACCCTCAATGCAAAGTTCCTAATTCACATATTCATGGCATTACTACTCAGATGGTCAACAAACCAGATGTTCCAAGGATGGAGGACCTAATTCCTATCTTATTGCAATATGTTCGAAGTCGTGAGAAGCCTGGGGGACATGTGTTATTTGTTGGTCATAATGCTCGTTGTTTTGATGTCCCTTTCATCATGAACGAATTACGACGTTATTCTATGAACATTCCTTCTAATTGGTTGTTCTTAGACACTCTGCCTTTAGCACGTGAGCTAATGAAATCTGGAGGTACTAAACTTTCTTCAACTTCCCTACCTGCCCTTCGTGACCTCTACGGAATTAAAGTGGATGGATCAGCTCACAGGGCCATGGTAGATGTGAACACATTGTCCTTGGTTCTTCCCAGGTTGACCCGTGATCTGAAATTGACCCTATCTGCTCTTGTCAAAAAATCATTCAAAGAATCAGATATTGGCAACTCCAAGAAGAAGAAAACTTCAGACTAG 996 0.3946 MKTGSMIFSLLYLPRCRIQRLANYWGETFHSFSSTCGNNSSTRSLSYRIYGLQGGQRKKWTRPITTNTEGKGNTKSKSIKHEILSETIIEGATVDVNKTQLDQFQEIQYRDIQKEIAQNKDLSSLFTIIVFDIETTGLSREKERIIEIAFRDLEGGENSTFQTLINPQCKVPNSHIHGITTQMVNKPDVPRMEDLIPILLQYVRSREKPGGHVLFVGHNARCFDVPFIMNELRRYSMNIPSNWLFLDTLPLARELMKSGGTKLSSTSLPALRDLYGIKVDGSAHRAMVDVNTLSLVLPRLTRDLKLTLSALVKKSFKESDIGNSKKKKTSD* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2343 331 PANTHER POLYMERASE III POLC-TYPE, PUTATIVE ISOFORM 1-RELATED 3 328 - -
Pvu1g2343 331 SUPERFAMILY Ribonuclease H-like 125 307 IPR012337 -
Pvu1g2343 331 CDD DEDDh 129 297 - -
Pvu1g2343 331 Pfam Exonuclease 129 293 IPR013520 -
Pvu1g2343 331 Gene3D - 126 318 IPR036397 GO:0003676
Pvu1g2343 331 PANTHER THREE PRIME REPAIR EXONUCLEASE 1, 2 3 328 IPR040393 GO:0008408
Pvu1g2343 331 SMART exoiiiendus 127 306 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2343 Pvu-Chr1 48811605 48815341 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2343 - - gmx:100799702 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2343 1 48811605 48815341 Pvu7g2056 7 43949234 43952069 ECH
Pvu1g2343 1 48811605 48815341 Pvu1g2343 1 48811605 48815341 ECH
Pvu1g2343 1 48811605 48815341 Pvu7g2056 7 43949234 43952069 PCT