Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2325 ATGTATGTCTTTGGGGGTTGCTGTGGGGGGCTGCATTTTTGCGATGTTCTCACTCTGGACCTTAACAAAATGGTTTGGAGCAAGCTTACTACTACCGGTGAGAAGCCAGGGCCGAGAGATAGCCACAGTGCTGTTCTCGTGGGGCATAAAATGATAGTGTTTGGTGGCACGAATGGGTTCAAGAAGGTGAATCACATTCACATACTTGATCTTGTTACCAAAGAGTGGTTTCGACCTGAATGTAAAGGGTCTCCTCCTTCTCCACGTGAAAGCCACACTGCCACGCTGGTTGGTGATGAAAGGATAGTGATATTTGGTGGTAGTGGTGAAGGCCATGCTAACTATTTAAATGATTTGCATATTCTTGATCTTCGAACCATGAATTGGACCTCCCCTGAGTTGAAAGGTGATTTGCCTGTCCCCAGGGACAGTCATAGTACCCTTGCAATCGGGAACAAACTTATTGTGTATGGTGGAGATTCTGGTGATCAGTATCATGGCAATGTTCATATGCTTGATATGGCTACAATGACTTGGTCTAGATTGACGATTCAAGGTTCTCCACCAGGAGTCAGGGCAGGTCATGCTGCAGTTAACATTGGAACAAAGGTGTATATCATCGGAGGAGTTGGAGATAAACGTTACTATAATGACGTTTGGATCTTTGATATTTGCAATTTGTCGTGGACTCAACTTGATATACATTTTCAACAGCCACAAGGGCGATTTTCTCATACAGCTGTTGCTGCAGGCATGGATATTGCAATATATGGCGGGTGTGGGGAAGATGAACGTCCTCTCAATGAATTGTTAGTGTTGCAGCTTGCAGCAGAGCATCCAAATGGGCGTTACTACGTACCCATGTGCAAACCTATTGGAACTTTCTGGAATCAAGAAAAAAATATTATCCCAGCAGAAGCGGATACCAAATCGAAAACTATCCTCGTGAGGAATAATGTGGAAGCTTTTGGAAATGGAGCTCACGAAATTGCATCAGAAAAATCGTCACCTTATCACTTTGATTCAGGTACATCACGACAGAAGAGGAGGAGAATTGCTGCTGCAAAGGTATGGGATGTTGAATCGGAACAAGAAGATAGTTTTCTTTCATTGTCTCTTCATTCATCTCCGTATCAATCTGATCAAGAACAGACCCCGAGTCAAGAAGCAAATACATTATTTCCAACCACTTCCCAACACGAAAATGTCTCAAATTATAAGAGAACTTTGAAGAACATCCCACTTAAGACTCCTCAGGCTCTTCATTTCCTACAGCATAAACTAAAACAGGAACAATGTTTTCATGTTAACGAGGATAGAAAACGAGCTCAACGTCAGGCTGCAGAGCAGAAACCAATGATGCGACCCATTCAACACCTGATTGGTGCTGAAGTTGGGGAGAGAGTTGAAGGATCCTATGACTCAGTTTCGCTATCTCCTGCAGCTGTGAATGGAAGGATTTTCCGGGGAGTCATATTTGCACCTGGAGCAGGAGTTGTCTCAAAGGGTGCCAGTGTTAAACCAAATTGTCCTCTAACTGCTTCACTTCCTTCTTCTCAAGCCTTTTTAAGGGCTTCACAAGAAGCACCAATTTGTTTGCATGCAGAGCCATACCATGGTTCACGATCAAGGCAAACCCCAGTGGCTTTACCATTTCCAATCATGGGAGCGACTCCTAGTGTTGTTTCGAAGGAGCATAAAATCAGGAGTGATCTTCAAGGGTTGGCTCTAACACTAGGAGGACCGGCTAGTGGAAATCCCCAGGTAAAACACCGAGGAGGCAAATGA 1788 0.4413 MYVFGGCCGGLHFCDVLTLDLNKMVWSKLTTTGEKPGPRDSHSAVLVGHKMIVFGGTNGFKKVNHIHILDLVTKEWFRPECKGSPPSPRESHTATLVGDERIVIFGGSGEGHANYLNDLHILDLRTMNWTSPELKGDLPVPRDSHSTLAIGNKLIVYGGDSGDQYHGNVHMLDMATMTWSRLTIQGSPPGVRAGHAAVNIGTKVYIIGGVGDKRYYNDVWIFDICNLSWTQLDIHFQQPQGRFSHTAVAAGMDIAIYGGCGEDERPLNELLVLQLAAEHPNGRYYVPMCKPIGTFWNQEKNIIPAEADTKSKTILVRNNVEAFGNGAHEIASEKSSPYHFDSGTSRQKRRRIAAAKVWDVESEQEDSFLSLSLHSSPYQSDQEQTPSQEANTLFPTTSQHENVSNYKRTLKNIPLKTPQALHFLQHKLKQEQCFHVNEDRKRAQRQAAEQKPMMRPIQHLIGAEVGERVEGSYDSVSLSPAAVNGRIFRGVIFAPGAGVVSKGASVKPNCPLTASLPSSQAFLRASQEAPICLHAEPYHGSRSRQTPVALPFPIMGATPSVVSKEHKIRSDLQGLALTLGGPASGNPQVKHRGGK* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2325 595 SUPERFAMILY Kelch motif 1 276 IPR015915 GO:0005515
Pvu1g2325 595 Gene3D - 82 324 IPR015915 GO:0005515
Pvu1g2325 595 PANTHER KELCH REPEAT DOMAIN 1 585 - -
Pvu1g2325 595 Pfam Galactose oxidase, central domain 1 46 - -
Pvu1g2325 595 Pfam Galactose oxidase, central domain 100 150 - -
Pvu1g2325 595 Pfam Galactose oxidase, central domain 48 96 - -
Pvu1g2325 595 Gene3D - 1 81 IPR015915 GO:0005515
Pvu1g2325 595 PANTHER OS01G0300900 PROTEIN 1 585 - -
Pvu1g2325 595 Pfam Kelch motif 192 232 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2325 Pvu-Chr1 48652548 48656593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2325 15 276 Acyl Lipid Metabolism Gene Families AT3G05420 27.338 2.55e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2325 K20285 - gmx:100814299 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2325 1 48652548 48656593 Pvu1g2325 1 48652548 48656593 ECH
Pvu1g2325 1 48652548 48656593 Pvu7g2076 7 44119126 44123199 PCT