Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu1g2316 | ATGTTGCAGTGCATATTTCTTCTGTCTGATTCTGGAGAGGTAATGCTAGAGAAACAGCTTAGTGGGCACCGCGTAGATCGCTCAATATGTGCCTGGTTCTGGGACCAAGCCATTTCTCAACCTGATTCTTTCAAGCAACAACCAGTTATTGCTTCCCCCACGCATTATCTATTCCAAGTTTTTCGTGAGGGAATCACTTTTTTGGCCTGCACTCAAGTCGAAATGCCCCCATTGATGGCCACTGAGTTCCTTTGTAGGGTGGCTGATGTTCTCAGTGAATATCTTGGGGGATTGAATGAAGACTTGATCAAAGACAACTTTGTCATTGTGTATGAGCTTTTGGATGAGATGATAGACAATGGCTTCCCGCTAACTACTGAACCTAACATCCTGCGAGAGATGATAGCCCCACCTAATATTGTTAGCAAAGTTTTGAGTGTTGTAACTGGCAGCAGCTCCAATGTGAGTGACACCCTCCCAGGTGCTACTGCATCTCTTGTTCCCTGGAGAACAGCGGACACAAAGTATGCCAACAATGAAATTTATGTAGATCTTGTTGAAGAAATGGATGCAACAATAAACAGGGATGGAGGTCTGGTGAAATGTGAGATCAGTGGTGAGGTTCAAGTGAATTCCCATATCACGGGTCTTCCTGATTTGACTCTTTCATTTTCAAATCCTTCAATCCTTGATGATGTGAGATTCCATCCCTGTGTCAGATATCGGCCCTGGGAATCCCATCAATTTCTTTCATTCGTGCCTCCTGATGGGCAGTTTAAGCTCATGAGTTACAGAGTTAGAAAATTGAAGAACACCCCAATATATGTAAATCCACAGTTGACTTCAGACGGTGGAACATGCCGTCTTAGTGTATTGGTTGGAATAAGAAATGATCCTGGAAAGACAATTGATTCCGTTACTGTCCAATTTCAGCTTCCTTCTTGTATCTTATCAGCTGATCTGACTTCAAATTATGGAATAGTGAACATACTGTCTGACAAGACATGCTCTTGGTCCATTGGTCGGATCCCAAAGGATAAAGCCCCTTCAATGTCAGGAACATTGGTGCTGGAGACTGGATTGGAGCGCCTTCACGTCTTTCCCACATTTCAAGTGGGTTTTAGGATTATGGGTGTTGCCCTCTCTGGTCTGCAAATAGATAAACTGGATCTGAAGACTGTACCCTACCGTTTTTATAAAGGTTTTCGAGCTCTTACTCGGGCAGGAGAATTTGATGTGAGGTCATAA | 1248 | 0.4351 | MLQCIFLLSDSGEVMLEKQLSGHRVDRSICAWFWDQAISQPDSFKQQPVIASPTHYLFQVFREGITFLACTQVEMPPLMATEFLCRVADVLSEYLGGLNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKVLSVVTGSSSNVSDTLPGATASLVPWRTADTKYANNEIYVDLVEEMDATINRDGGLVKCEISGEVQVNSHITGLPDLTLSFSNPSILDDVRFHPCVRYRPWESHQFLSFVPPDGQFKLMSYRVRKLKNTPIYVNPQLTSDGGTCRLSVLVGIRNDPGKTIDSVTVQFQLPSCILSADLTSNYGIVNILSDKTCSWSIGRIPKDKAPSMSGTLVLETGLERLHVFPTFQVGFRIMGVALSGLQIDKLDLKTVPYRFYKGFRALTRAGEFDVRS* | 416 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu1g2316 | 415 | ProSiteProfiles | Mu homology domain (MHD) profile. | 178 | 414 | IPR028565 | - | |
| Pvu1g2316 | 415 | PIRSF | AP_complex_mu | 1 | 415 | IPR001392 | GO:0006886|GO:0016192|GO:0030131 | |
| Pvu1g2316 | 415 | ProSitePatterns | Clathrin adaptor complexes medium chain signature 1. | 167 | 187 | IPR018240 | GO:0006886|GO:0016192|GO:0030131 | |
| Pvu1g2316 | 415 | CDD | AP-3_Mu3_Cterm | 167 | 414 | - | - | |
| Pvu1g2316 | 415 | Gene3D | - | 1 | 142 | - | - | |
| Pvu1g2316 | 415 | PANTHER | AP COMPLEX SUBUNIT MU | 7 | 414 | - | - | |
| Pvu1g2316 | 415 | PRINTS | Clathrin coat assembly protein signature | 100 | 127 | IPR001392 | GO:0006886|GO:0016192|GO:0030131 | |
| Pvu1g2316 | 415 | PRINTS | Clathrin coat assembly protein signature | 230 | 257 | IPR001392 | GO:0006886|GO:0016192|GO:0030131 | |
| Pvu1g2316 | 415 | PRINTS | Clathrin coat assembly protein signature | 337 | 348 | IPR001392 | GO:0006886|GO:0016192|GO:0030131 | |
| Pvu1g2316 | 415 | SUPERFAMILY | Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 167 | 414 | IPR036168 | - | |
| Pvu1g2316 | 415 | SUPERFAMILY | SNARE-like | 1 | 142 | IPR011012 | - | |
| Pvu1g2316 | 415 | Gene3D | Mu homology domain, subdomain B | 167 | 410 | - | - | |
| Pvu1g2316 | 415 | Pfam | Adaptor complexes medium subunit family | 167 | 414 | IPR028565 | - | |
| Pvu1g2316 | 415 | Gene3D | Mu homology domain, subdomain B | 272 | 412 | - | - | |
| Pvu1g2316 | 415 | PANTHER | CARMINE, ISOFORM A | 7 | 414 | - | - | |
| Pvu1g2316 | 415 | CDD | AP3_Mu_N | 3 | 142 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu1g2316 | Pvu-Chr1 | 48590058 | 48593529 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu1g2316 | K12398 | - | gmx:100799191 | 798.505 |
Event-related genes